PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05368g05004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 301aa    MW: 34041.4 Da    PI: 9.6262
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05368g05004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.79.5e-3261114255
                   G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                rlrWt++LH+rFv+ave+LGG+e+AtPk +l+lm++kgL ++hvkSHLQ+YR+
  Niben101Scf05368g05004.1  61 VRLRWTTDLHRRFVQAVERLGGQERATPKLVLQLMNIKGLNIAHVKSHLQMYRS 114
                               59***************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.79557117IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-2957115IPR009057Homeodomain-like
SuperFamilySSF466891.59E-1462115IPR009057Homeodomain-like
TIGRFAMsTIGR015574.0E-2362116IPR006447Myb domain, plants
PfamPF002491.6E-862113IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MEDSDDTLCL KTSPNYSEKN KDESDNNSIK LPKDGGSSSN STVEEGEKKL HVRPYVRSKM  60
VRLRWTTDLH RRFVQAVERL GGQERATPKL VLQLMNIKGL NIAHVKSHLQ MYRSKKIDDP  120
TQGIANYRPF MEGGDPNIYD MSELPLLPTI NQRFNCTFSE RILGSNNRAI HQDSITGIPS  180
FNSERSTWRT NEVTDEMGLF RNKQKYGQSL FRKSPIDNLV PLFQRAAKAK ARLSLLKRKA  240
IDCDLIDLNL SLGVKQKNNS DGDNDGSTLS LSMSGSRLKE EDDYATKENA RRGASTLDLT  300
L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A8e-1862116357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B8e-1862116357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C8e-1862116357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D8e-1862116357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009767509.10.0PREDICTED: two-component response regulator ARR18-like
RefseqXP_016484800.10.0PREDICTED: two-component response regulator ARR18-like
TrEMBLA0A1S4B7750.0A0A1S4B775_TOBAC; two-component response regulator ARR18-like
TrEMBLA0A1U7VYP90.0A0A1U7VYP9_NICSY; two-component response regulator ARR18-like
STRINGXP_009767509.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43822141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.19e-51G2-like family protein