PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05387g06001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 461aa    MW: 50341.5 Da    PI: 5.0423
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05387g06001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.77.6e-31247305259
                               --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                               +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  Niben101Scf05387g06001.1 247 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 305
                               699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081132.673241307IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-30245307IPR003657WRKY domain
SuperFamilySSF1182903.92E-26245307IPR003657WRKY domain
SMARTSM007741.4E-37246306IPR003657WRKY domain
PfamPF031069.9E-26248305IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MCSKFQLQKP TMENNYQGDL ADIFLGSSGP NISGSNNITT TSGESSSTTA AAAVTDGWLG  60
QFPSHPINYS ASGIEDSSVQ DFGDPFCNMR DPLFNDLDMM SASSNLFTSN NDNNNNNNND  120
ISLFGPKILE ETEMKSRPTG NIFSRMLQIS PTTKLAAAMS PCSSPMTGAV ALQPPSTVIA  180
GGGELVANDA IIFPNSSKTC LVENSGLQIS SPRNTGIKRR KSQAKKVVCI PAPAPANSRQ  240
GGEIVPSDLW AWRKYGQKPI KGSPYPRGYY RCSSSKGCSA RKQVERSRTD PNMLVITYTS  300
EHNHPWPTQR NALAGSTRSQ PNNSKHTTTS TSKNNINSKD DEQNTSTTVA QINISQVKEE  360
VAELQDLRHD QDQQQQQLAV EMHDVEYSKD SYQPILPDSS SNNSHEDFFA DLVELEADPL  420
NLLFAKTLSE DINEAGQKKT IDAFNMYDWS GNNNNKSQAD P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B6e-26221308280Disease resistance protein RRS1
5w3x_D6e-26221308280Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00171DAPTransfer from AT1G30650Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009622546.10.0PREDICTED: probable WRKY transcription factor 14
TrEMBLA0A1S4A2I60.0A0A1S4A2I6_TOBAC; probable WRKY transcription factor 14
STRINGXP_009622546.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67012433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30650.13e-86WRKY DNA-binding protein 14