PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf05391g03014.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 162aa MW: 18918.7 Da PI: 10.7324

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf05391g03014.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	52.3	1.9e-16	28	150	1	117
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk...lelee.vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.... 77 lp+G++F+ +d e++ e+Lk+k + l+ + ++ e+++ +++ ++ ++e + +fF++ +k+y tg+rk+r+ Niben101Scf05391g03014.1 28 LPVGVKFDTSDREIL-EHLKAKSFFLElidLNYSGnFVVELGLPRSNTNRV----NKEGQIRHFFHRPSKAYITGNRKRRKvdtn 107 799*********9.89999988877533222221366666666555555....4566777**************74655 PP NAM 78 tk..sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkge 117 t+ + +W++tgk+++v+ +g l g kk+Lv+y gr++k+e Niben101Scf05391g03014.1 108 TEggETRWHKTGKTRPVFI-NGVLEGYKKILVLYtnYGRQRKPE 150 3344667********.99**********5535665554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.54E-16	21	150	IPR003441	NAC domain
PROSITE profile	PS51005	15.581	28	162	IPR003441	NAC domain
Pfam	PF02365	1.3E-5	29	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MIDINSSKRL IYIYNWNYYR GIHHLPGLPV GVKFDTSDRE ILEHLKAKSF FLELIDLNYS 60 GNFVVELGLP RSNTNRVNKE GQIRHFFHRP SKAYITGNRK RRKVDTNTEG GETRWHKTGK 120 TRPVFINGVL EGYKKILVLY TNYGRQRKPE KPQLGNASIS LR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009608935.1	1e-60	PREDICTED: NAC domain-containing protein 73-like
Refseq	XP_009608936.1	1e-60	PREDICTED: NAC domain-containing protein 73-like
Swissprot	O49459	1e-46	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	A0A1J6I2D3	5e-56	A0A1J6I2D3_NICAT; Nac domain-containing protein 73
STRING	XP_009608935.1	4e-60	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	5e-49	NAC domain containing protein 73

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]