PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05396g03003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 457aa    MW: 50196 Da    PI: 8.3609
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05396g03003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP127.81.1e-39612132135
                       TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasns 85 
                                g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWLl++a p+i el+++++ + ++  + ++++ssa+++
  Niben101Scf05396g03003.1  61 SGGKDRHSKVWTSKGLRDRRVRLSVNTAIQFYDLQDRLGYDQPSKAVEWLLKAAAPSISELPSLNAFPDTQQiS-DDKRSSAGTE 144
                               689*************************************************************5555544422.2222222222 PP

                       TCP  86 ssg..................kaaksaakskksqksaasalnlak.esrakarararertrekmriknk 135
                               + +                   + +++a+s+ s++s+ s l+l++ e r kar+rarer +ek + k++
  Niben101Scf05396g03003.1 145 QGPdsaevemdgdpnyrhqhhVSLSKSACSSTSETSKGSGLSLSRsENRVKARERARERAAEKEKEKEN 213
                               2223556666777777788766666667999999999999*****9*****************998865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.2E-4162210IPR005333Transcription factor, TCP
PROSITE profilePS5136932.18163121IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.972190209IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MEVDEIQKQG CKFPRISNGN GRFESQDENG AVKGSHGLGG GGIGRLCGWP SNRIVRVSRA  60
SGGKDRHSKV WTSKGLRDRR VRLSVNTAIQ FYDLQDRLGY DQPSKAVEWL LKAAAPSISE  120
LPSLNAFPDT QQISDDKRSS AGTEQGPDSA EVEMDGDPNY RHQHHVSLSK SACSSTSETS  180
KGSGLSLSRS ENRVKARERA RERAAEKEKE KENESTRTAH HQNVHPISHN SSFTELLTGG  240
MNSNNNINTC NGRGGETNLF NKSPRQWSSA SPFEYFPSGL LGLRRNDNST SSFHLGNPIQ  300
QQTLPVSSPM FSVTGDHHPE LQHFPFVSDH LGSNGHASNS ANEYNLNFSI SSSSSSGLAG  360
YNRGTLQSNS SPLLPHFQRY EGSQSFFNGS TIAAAIAPNS TAAVSVDNHH HFLSAYDAGR  420
LQLFYNDSIQ IRKEKEKTEF PSHLHKWQLK MEAAATE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-2368122155Putative transcription factor PCF6
5zkt_B1e-2368122155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019234653.10.0PREDICTED: transcription factor TCP2-like
TrEMBLA0A1J6K9240.0A0A1J6K924_NICAT; Transcription factor tcp24
STRINGXP_009784722.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24642252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.28e-38TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2