PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05404g01002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 216aa    MW: 24387.3 Da    PI: 5.3182
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05404g01002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.79.1e-055375123
                              EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                              y+C+ C++ Fs+   L  H++ H
  Niben101Scf05404g01002.1 53 YRCSFCKRGFSNAQALGGHMNIH 75
                              9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.45E-65179No hitNo description
Gene3DG3DSA:3.30.160.602.5E-45177IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00535375IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.4685380IPR007087Zinc finger, C2H2
PROSITE patternPS0002805575IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MTSSPFCSKY LFIPTSQPCP FNSMEIDPPN SDKSDKIITW SSDELGLGHV KFYRCSFCKR  60
GFSNAQALGG HMNIHRKDRA RLREFSSENL LSLDINNSVN PPLPPPLPAH AEEDSLQHEV  120
SCDETISSPS KRPRVNTSEE NDHKVNYDDH NHETIIGDVL QLPLFTMTPL IKEASNCVDR  180
QGEEKGTQLN HVSEWDLELR LGMEPPESSM KIPRSL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019229488.11e-113PREDICTED: transcriptional regulator TAC1-like
TrEMBLA0A314KKV01e-112A0A314KKV0_NICAT; Transcriptional regulator tac1
STRINGXP_009768409.11e-103(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74631626
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.15e-15C2H2 family protein