PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf05411g02003.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 222aa MW: 24739.9 Da PI: 10.2897

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf05411g02003.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.5	1.1e-05	197	219	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 Cp Cg++F+ ++L++H+ + H Niben101Scf05411g02003.1 197 ACPECGEVFPKIESLEHHQAVrH 219 6******************9888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	196	219	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.596	196	222	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MKKRTTSSSS TIVILFHFLA LLFMALLTFT PEISENTQKQ PSKRRKKQQI KQQKEKQKQP 60 SSWDQFKNLL TCKQIENSTV HDPASKNSKL GSCSSICSFR DVVHGNTRVV HRADNSPESS 120 SLGQETRLLS KNKASHHHGQ SSSSSRSLAT SNGSASSTYN TTSSSRGMQF RKLSGCYECH 180 MIVDPSRYPL PRSTICACPE CGEVFPKIES LEHHQAVRHA GN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009616115.1	1e-107	PREDICTED: uncharacterized protein LOC104108715
TrEMBL	A0A1U8GAQ6	1e-105	A0A1U8GAQ6_CAPAN; uncharacterized protein LOC107866896
STRING	XP_009616115.1	1e-107	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5195	23	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-55	C2H2-like zinc finger protein