PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05411g02017.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family E2F/DP
Protein Properties Length: 371aa    MW: 40752.1 Da    PI: 6.3518
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05411g02017.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP77.41.3e-24119184171
                   E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                               r ++sL+llt+kf++ll+++e+g ++ln+ a+ L   +v   +RRiYDi+NVLe+++liek+ k++i wkg
  Niben101Scf05411g02017.1 119 RFDNSLGLLTKKFISLLQEAEDGSLDLNHSADVL---KV--AKRRIYDITNVLEGIGLIEKTTKSRICWKG 184
                               6799******************************...88..****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.4E-25119186IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013725.3E-31119184IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467856.62E-16119182IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023193.2E-22121184IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146601.50E-37195302No hitNo description
SuperFamilySSF1440742.62E-22196301No hitNo description
PfamPF164211.3E-21200299IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MSTAGENVDL NLNLNLSLAP LHLMSQICSE SRPVARNLFA SSTFVSAPQN NGTEKSKDDT  60
CGYGVCKRTI AANHSPLGQA ARARAKKSSK GKASSDAISA STGINADPLD KLNLGGSYRF  120
DNSLGLLTKK FISLLQEAED GSLDLNHSAD VLKVAKRRIY DITNVLEGIG LIEKTTKSRI  180
CWKGFPSTIS RGLHDQVSRL KGEIEYLNAE DCRLDNCIRE KLEQIRTLES DVNCQKSLLL  240
TEEDIMSLPH FRDKTVIAIK APDASLIEVP DPCEDLDFPE KQYRLVLRST TGPIDLFLLS  300
KQGWKHEDIT IKHTKQWDAL TADEKMDDAY LSSVPPCSLD STTSKLSGVH KIVPSHASEV  360
SATDLWGIEH S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A1e-22115185374PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151157LKVAKRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009783024.10.0PREDICTED: transcription factor E2FC-like
TrEMBLA0A1U7X7Y40.0A0A1U7X7Y4_NICSY; transcription factor E2FC-like
STRINGXP_009783024.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA126252022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47870.14e-75E2F/DP family protein