PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05417g03024.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 260aa    MW: 29304.2 Da    PI: 5.4181
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05417g03024.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.95.6e-11113158555
                               HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               h + Er+RR+++ + f  L ++lP +     kK++Ka+ L  +++Y+k+Lq
  Niben101Scf05417g03024.1 113 HAILERKRRQKLTQLFISLSKILPGL-----KKMDKASLLGDTIQYMKELQ 158
                               999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.935108157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.62E-10113162No hitNo description
PfamPF000107.3E-9113158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-14113170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.23E-15113170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-11114163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MAKDGVDYDG LSHQGSIDDF LLEDDFFIPN PILSEMYTTL TPTCIIEKNA RKALISPPSS  60
SSSSSCSEVL ISFSTPTKRD VEKSYFYPLT HHFEESTGNN NVHKKNSVDA GDHAILERKR  120
RQKLTQLFIS LSKILPGLKK MDKASLLGDT IQYMKELQQR VKFLEEEIKN NPSKRLLAAK  180
VPSDVSLSQG SDYSSNEEDI VAEINLREFD ESALINIYCN KQNGVVGRIL SEMEKLHLSV  240
RDMNIMSFSR TFLDISIVAE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116121ERKRRQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019244654.11e-162PREDICTED: transcription factor bHLH25-like
TrEMBLA0A1J6JBH11e-161A0A1J6JBH1_NICAT; Transcription factor bhlh25
STRINGXP_009606580.11e-140(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1623655
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.17e-35bHLH family protein