PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05449g03005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 190aa    MW: 21441.6 Da    PI: 9.3325
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05449g03005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA32.41.3e-10160179120
                      GATA   1 CsnCgttkTplWRrgpdgnk 20 
                               Cs C+ttkTplWR+gp g+k
  Niben101Scf05449g03005.1 160 CSDCNTTKTPLWRSGPKGPK 179
                               ******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004010.0035154189IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.75E-5157178No hitNo description
Gene3DG3DSA:3.30.50.108.5E-8158179IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS501149.341158177IPR000679Zinc finger, GATA-type
PfamPF003204.6E-8160179IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MIPTFRSSSS SPSFPFELNN NEVHDPSHIN PLVSPSYQVA SSSSYSSCQT FFTNSSTNQD  60
QTGYYNSQFY QPQHQPEVDN FASRSGSHDP LEKKHKGLKL TLWKKGDKLM QKMKNSDHTH  120
IKLKLEDQKK QQSSPNLETD YSSNSSSNNS NNNNIPIRVC SDCNTTKTPL WRSGPKGPKV  180
IFSYSITINN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016488017.13e-96PREDICTED: putative GATA transcription factor 22
TrEMBLA0A1S4BGN56e-95A0A1S4BGN5_TOBAC; putative GATA transcription factor 22
STRINGSolyc12g008830.1.12e-44(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30972249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.16e-11GATA family protein