PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05459g00001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 246aa    MW: 27995.6 Da    PI: 7.3056
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05459g00001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39.3e-1959109256
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                y+GVr++  +++Wv+e+r+ps+   +kr++lg++ t+e+Aa+a++ a+++l+g+
  Niben101Scf05459g00001.1  59 IYRGVRRRN-NNKWVCELREPSK---QKRIWLGTYPTPEMAARAHDVAALALRGN 109
                               69****887.8*********964...5*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.89E-3058118No hitNo description
PfamPF008476.3E-1458108IPR001471AP2/ERF domain
PROSITE profilePS5103221.98359116IPR001471AP2/ERF domain
SMARTSM003804.0E-2959122IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-2159118IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.2E-2959118IPR001471AP2/ERF domain
PRINTSPR003673.0E-76071IPR001471AP2/ERF domain
PRINTSPR003673.0E-78298IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MNNINSISCS LDSSHSQETS SSSSGRSSVV PDEGIVLLAT SRPKKRAGRK KFKETRHPIY  60
RGVRRRNNNK WVCELREPSK QKRIWLGTYP TPEMAARAHD VAALALRGNS ATLNFADSLW  120
RLPVIVSKDP KDLRQAAVKA AEAFRQDPEL VGLDYMNYEV NSNEQLKCKE NVVNDSSYDM  180
GIKELKMKNM EMENILCCNW GEDSEKSWQE KMAEGLLFSP TPRLGDCFIW DDVESDVEVS  240
LWNYNI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019250685.11e-160PREDICTED: dehydration-responsive element-binding protein 1F-like
TrEMBLA0A1J6I9W61e-159A0A1J6I9W6_NICAT; Dehydration-responsive element-binding protein 1f
STRINGXP_009764159.11e-152(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26324183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12610.16e-45ERF family protein