PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf05483g00007.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 366aa MW: 41181.5 Da PI: 6.2833

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf05483g00007.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.3	1.7e-10	172	217	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h + +r+ R+++N+++ Lr l+P++ +K++ a+i+ A+ YI++L Niben101Scf05483g00007.1 172 KHFATDRQKREHLNDKYKALRNLVPNP-----TKNDRASIVGDAIMYINEL 217 799**********************.....9*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.14E-13	166	229	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.49E-10	166	221	No hit	No description
PROSITE profile	PS50888	14.081	168	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.8E-11	172	225	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.8E-8	172	217	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.0E-7	174	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MELQQQVNLE MQHSCNTNNC NNSVVANSLT QESSSHQGPS FDQSNWGDSI SFPQFHHFQA 60 PLHTDMFPLH TICSFSFTNT TQFPLHTADG ASTSTAIYDP SLLPLNIPPN PPLIRELVRS 120 TFGSLFNGVE TEVSGDIYQD AGEGKSPFNN GIFEFSADTS CMTKDRENKE IKHFATDRQK 180 REHLNDKYKA LRNLVPNPTK NDRASIVGDA IMYINELKRT VNELKILVDK KLCCRDRIKR 240 QKSGPMNSAD VKIRNEVDRS SLRSVWLQRK TINTEVDVWI VDDEVTVKLV QPKRINCLLF 300 VSKVLDDLQL DLHHVAGGLI GDCYCFLFNS KICEGSTVYA IAIANRLIEI VDTEISPCNT 360 TSTPLQ

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MELQQQVNLE MQHSCNTNNC NNSVVANSLT QESSSHQGPS FDQSNWGDSI SFPQFHHFQA  60
PLHTDMFPLH TICSFSFTNT TQFPLHTADG ASTSTAIYDP SLLPLNIPPN PPLIRELVRS  120
TFGSLFNGVE TEVSGDIYQD AGEGKSPFNN GIFEFSADTS CMTKDRENKE IKHFATDRQK  180
REHLNDKYKA LRNLVPNPTK NDRASIVGDA IMYINELKRT VNELKILVDK KLCCRDRIKR  240
QKSGPMNSAD VKIRNEVDRS SLRSVWLQRK TINTEVDVWI VDDEVTVKLV QPKRINCLLF  300
VSKVLDDLQL DLHHVAGGLI GDCYCFLFNS KICEGSTVYA IAIANRLIEI VDTEISPCNT  360
TSTPLQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009784938.1	0.0	PREDICTED: transcription factor bHLH91-like isoform X1
TrEMBL	A0A1U7X276	0.0	A0A1U7X276_NICSY; transcription factor bHLH91-like isoform X1
STRING	XP_009784938.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2696	23	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31220.1	2e-59	bHLH family protein