PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05483g01006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 132aa    MW: 14810.2 Da    PI: 4.5985
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05483g01006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.42.2e-12501063796
                               EEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                        B3  37 tledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                               ++ +  g++W++ ++ +++  r  l++GWk Fv++n+Lk gD +vF+l++ s++++++kv
  Niben101Scf05483g01006.1  50 VVLTCCGKKWDMFCSGDNQ--R-RLKQGWKFFVNDNNLKIGDGLVFELVEGSRAKMTFKV 106
                               3455679*******44444..4.59**********************9977777777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.26E-1515109IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-1415110IPR015300DNA-binding pseudobarrel domain
CDDcd100172.08E-1516110No hitNo description
PROSITE profilePS5086311.50518112IPR003340B3 DNA binding domain
SMARTSM010190.003718112IPR003340B3 DNA binding domain
PfamPF023629.5E-1132106IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MAGSKDEDIS PLCGKPYFDF ILGQSNLEPK YMMFLPAKIC PELIPGEVPV VLTCCGKKWD  60
MFCSGDNQRR LKQGWKFFVN DNNLKIGDGL VFELVEGSRA KMTFKVQILR GDFPAELMTE  120
PEDGTAENPI VL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009792605.12e-87PREDICTED: B3 domain-containing protein Os04g0386900-like
TrEMBLA0A1U7Y1E44e-86A0A1U7Y1E4_NICSY; B3 domain-containing protein Os04g0386900-like
STRINGXP_009792605.17e-87(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18192154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.14e-08B3 family protein