PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf05491g02004.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bZIP

Protein Properties

Length: 541aa MW: 60198.7 Da PI: 7.0658

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf05491g02004.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.8	3e-10	211	248	5	42
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeN 42 k rr+++NReAA++sR+RKka++++Le+ L++ Niben101Scf05491g02004.1 211 KTLRRLAQNREAAKKSRLRKKAYVQQLETSRIRLSQLE 248 7789************************8655555544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.8E-7	205	253	No hit	No description
SMART	SM00338	6.3E-7	207	284	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.105	209	253	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.04E-6	211	253	No hit	No description
CDD	cd14708	8.77E-23	211	263	No hit	No description
Pfam	PF00170	1.1E-7	211	248	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	214	229	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	3.4E-31	292	364	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 541 aa Download sequence Send to blast
MASQGIGETG LTNSGSSNYH NMPYAVFRGL TPATTSFIYH STPNLFLACV NKNMCYSIQD 60 GSFGFGELEE AFALQGFKIN NDEAKESLYA AASTGKPAAT LNIFPSWPMR FQETPRENSK 120 SREEDISTDS GSLSSRAQAH LEPESPISTK ASSEQNQLQI TQQQQQQLHQ EMSSHNNPRT 180 GNLQTESAPK PNNMEKRKGA GSTSERMADP KTLRRLAQNR EAAKKSRLRK KAYVQQLETS 240 RIRLSQLEQE LQRARTQGIF LGGGTAAGAN ISSGAALFDM EYSRWLDDDQ RHMSELRTAL 300 QAHLSDGDLR LIVDGYIAHY DEIFSLKGVA AKSDVFHLIT GMWTTPAERC FLWMGGFRPS 360 ELIKASVACN FARMSSLLPM WWFGSIVPSP VMLIGQLDPL TEQQLMGIYS LQQSSQQAED 420 ALSQGLEQLQ QSLIDTVASG SINDGMHHMA LALGKLSNLE GFVRQADNLR QQTLHQIHRI 480 LTVRQAARCF LVIGEYYGRL RALSSLWLSR PRETLIADDS SCQTTTELQM VHSSQNHFSN 540 F

Sequence ? help Back to Top

Protein Sequence Length: 541 aa Download sequence Send to blast

MASQGIGETG LTNSGSSNYH NMPYAVFRGL TPATTSFIYH STPNLFLACV NKNMCYSIQD  60
GSFGFGELEE AFALQGFKIN NDEAKESLYA AASTGKPAAT LNIFPSWPMR FQETPRENSK  120
SREEDISTDS GSLSSRAQAH LEPESPISTK ASSEQNQLQI TQQQQQQLHQ EMSSHNNPRT  180
GNLQTESAPK PNNMEKRKGA GSTSERMADP KTLRRLAQNR EAAKKSRLRK KAYVQQLETS  240
RIRLSQLEQE LQRARTQGIF LGGGTAAGAN ISSGAALFDM EYSRWLDDDQ RHMSELRTAL  300
QAHLSDGDLR LIVDGYIAHY DEIFSLKGVA AKSDVFHLIT GMWTTPAERC FLWMGGFRPS  360
ELIKASVACN FARMSSLLPM WWFGSIVPSP VMLIGQLDPL TEQQLMGIYS LQQSSQQAED  420
ALSQGLEQLQ QSLIDTVASG SINDGMHHMA LALGKLSNLE GFVRQADNLR QQTLHQIHRI  480
LTVRQAARCF LVIGEYYGRL RALSSLWLSR PRETLIADDS SCQTTTELQM VHSSQNHFSN  540
F

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019229531.1	0.0	PREDICTED: transcription factor TGA2.2-like isoform X1
Swissprot	Q93XM6	0.0	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A314KL97	0.0	A0A314KL97_NICAT; Tgacg-sequence-specific dna-binding protein tga-2.1
STRING	XP_009623541.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3683	23	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-179	bZIP family protein

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]