PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05506g09008.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Dof
Protein Properties Length: 253aa    MW: 27380.7 Da    PI: 10.2427
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05506g09008.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof121.33.4e-3896155362
                    zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                               e+ lkcprCds+ntkfCy+nny+l+qPr+fCk+CrryWt+GGalr vPvGgg+r+nk+s+
  Niben101Scf05506g09008.1  96 EAGLKCPRCDSSNTKFCYFNNYNLAQPRHFCKSCRRYWTRGGALRSVPVGGGCRRNKRSK 155
                               6779*****************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-3579148IPR003851Zinc finger, Dof-type
PfamPF027013.6E-3298153IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.47899153IPR003851Zinc finger, Dof-type
PROSITE patternPS013610101137IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MSFSSFPVYL DHPNLQQLQQ LDHHQGNPGL ENSQLPTVAP HAQLQQLDHH QQGNPGLENS  60
QLPTGGPPAQ VGGSPGSIRP GSMVDRARLA KIPLPEAGLK CPRCDSSNTK FCYFNNYNLA  120
QPRHFCKSCR RYWTRGGALR SVPVGGGCRR NKRSKSTNNS SKTAGSSNSA ERQIGTTSTS  180
TSASPSSCSK EITGQHFSQS STHLTPLMAA FQNLNHQYGG FQPPPLVSLQ LVQVLQAAAK  240
KLLANTFHSH PHI
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements. {ECO:0000269|PubMed:12887587}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin and salicylic acid (SA). Repressed by jasmonic acid (JA). {ECO:0000269|PubMed:10758484, ECO:0000269|PubMed:12887587}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016444808.11e-128PREDICTED: dof zinc finger protein DOF2.4-like
SwissprotQ9M2U12e-45DOF36_ARATH; Dof zinc finger protein DOF3.6
TrEMBLA0A1S3XXZ71e-126A0A1S3XXZ7_TOBAC; dof zinc finger protein DOF2.4-like
STRINGXP_009774236.11e-125(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8824419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02460.13e-42Dof family protein