PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05516g00009.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 471aa    MW: 51845.9 Da    PI: 4.8643
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05516g00009.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like108.14.6e-34260314155
                   G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                               k+r+rWtpeLHe+Fveav++LGGse+AtPk +l+lmkv+gLt++hvkSHLQkYR+
  Niben101Scf05516g00009.1 260 KQRMRWTPELHEAFVEAVNKLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRT 314
                               79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.956257317IPR017930Myb domain
SuperFamilySSF466895.38E-18258314IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-31259316IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-25260314IPR006447Myb domain, plants
PfamPF002492.8E-10262313IPR001005SANT/Myb domain
PfamPF143791.8E-25345392IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MRTCVVFLHK VQMEARPAVS VQSVVASQLS NCGASGALSS SFPMLPTVLG EKYPLLPDLQ  60
QASTEKELKQ HPGAFVSHLP SNSGAVGLMF SSSSGLSADL HFSSIPPQEN HSGPAPFISQ  120
STNSETSILL PHSGVLQSTA SSQYLNENNE PWCIDPLPDF LDYSMNTPVQ NSQLACSNKQ  180
SDWQEWADLV INEEDALTSN WNEIMADTSL AETEMQHQEE KQPSNFPMQQ VQTSQQLPAV  240
AVENSAIAPA SSPASGAATK QRMRWTPELH EAFVEAVNKL GGSERATPKG VLKLMKVEGL  300
TIYHVKSHLQ KYRTARYKPE ASEESSEKKH SSIDDLSSLD LKTGIEITEA LRLQMEVQKR  360
LHEQLEIQRN LQLRIEEQGR YLQEMFEKQC KSMPGVDLAK GSSSTADDAF AQLSDAVQIS  420
SCKNDPGVSQ VDIAKEVDEK QKKREKEVGE PETNITSTFD SSPSKRSKLD E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-32260318260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-32260318260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-32260318260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-32260318260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-32260318260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-32260318260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-32260318260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-32260318260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019250365.10.0PREDICTED: protein PHOSPHATE STARVATION RESPONSE 1-like
TrEMBLA0A1J6IT580.0A0A1J6IT58_NICAT; Protein phosphate starvation response 1
STRINGXP_009781296.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27532349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28610.19e-80phosphate starvation response 1