PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05530g01002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 312aa    MW: 35873 Da    PI: 8.5111
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05530g01002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.62.1e-161462148
                              TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                              rg+W++eEd +l++ ++++G+g +W + +++ g++R++k+c++rw++yl
  Niben101Scf05530g01002.1 14 RGPWSPEEDAKLKEFIQKYGTGgNWIALPQKAGLRRCGKSCRLRWLNYL 62
                              89*********************************************97 PP
2Myb_DNA-binding36.31.3e-1169111246
                               SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               g ++ eEd  +  + +  G++ W+ Ia+ ++ gRt++++k++w++
  Niben101Scf05530g01002.1  69 GDFSDEEDRVICSLYASIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                               679******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.836962IPR017930Myb domain
SuperFamilySSF466891.88E-2711109IPR009057Homeodomain-like
SMARTSM007171.3E-121364IPR001005SANT/Myb domain
PfamPF002491.5E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.7E-241569IPR009057Homeodomain-like
CDDcd001679.19E-101662No hitNo description
PROSITE profilePS5129422.31763117IPR017930Myb domain
SMARTSM007177.3E-1167115IPR001005SANT/Myb domain
PfamPF002492.9E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-2370117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDAKLKEFIQ KYGTGGNWIA LPQKAGLRRC GKSCRLRWLN  60
YLRPNIKHGD FSDEEDRVIC SLYASIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMCL  120
KSPFFPTTNF QTPPTQPQTI ISSLFGDSYY TKTRSLTGGL QHISSSQPNL NYMNFIFHFG  180
TNQYSYFQPC QDESLMNPMQ VTCSSSDGSC NRLSYGKDIK QEEMGNFLQG QIPTTFEETQ  240
KFTLDYGNNI GRGNDHQLGT WTDHRSNFQF QYDKEQVKEL NGSFSSGNGC NNNSFYFYND  300
ENKTNERGMY YY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-27141177108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019262850.10.0PREDICTED: transcription factor RAX2-like
TrEMBLA0A314L7I30.0A0A314L7I3_NICAT; Transcription factor myb36
STRINGXP_009779682.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.12e-77myb domain protein 36