PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05536g01001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family DBB
Protein Properties Length: 176aa    MW: 19488.2 Da    PI: 7.3739
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05536g01001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.17.7e-08433534
                  zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                               C+ +e+  ++lfC  ++  lC+ C ++ H
  Niben101Scf05536g01001.1  4 LCDACESAAAILFCAADEAALCRACDEKVH 33
                              7**************************998 PP
2zf-B_box28.92.4e-095292238
                  zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38
                              + ++C+ +e+ ++ ++Ce +++ lC +C l  H g    H+
  Niben101Scf05536g01001.1 52 DVPRCDICENAPAFFYCEVDGSSLCLQCDLIVHVGgkrtHS 92
                              6799**************************99966555665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.7E-8147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.338147IPR000315B-box-type zinc finger
PfamPF006432.4E-6342IPR000315B-box-type zinc finger
CDDcd000211.25E-6345No hitNo description
SuperFamilySSF578456.87E-54888No hitNo description
SMARTSM003366.4E-105196IPR000315B-box-type zinc finger
PROSITE profilePS501199.25196IPR000315B-box-type zinc finger
PfamPF006431.8E-75291IPR000315B-box-type zinc finger
CDDcd000212.21E-75493No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MRTLCDACES AAAILFCAAD EAALCRACDE KVHMCNKLAS RHVRVGLAKP SDVPRCDICE  60
NAPAFFYCEV DGSSLCLQCD LIVHVGGKRT HSRYLLLRQK VEFPGDKPGP TEELAGKTLD  120
PGENKREYSH SPKPIVEDNQ QNRRSSPVVV SYGSSDDHAK KDKMIDLNLK PNRYHG
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009761013.11e-122PREDICTED: probable salt tolerance-like protein At1g78600
RefseqXP_016512410.11e-122PREDICTED: B-box zinc finger protein 19-like
SwissprotC0SVM51e-71BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A1S4DGB71e-120A0A1S4DGB7_TOBAC; B-box zinc finger protein 19-like
TrEMBLA0A1U7V3Q41e-120A0A1U7V3Q4_NICSY; probable salt tolerance-like protein At1g78600
STRINGXP_009761013.11e-121(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31752340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.15e-74DBB family protein