PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf05549g02006.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 542aa MW: 59307.1 Da PI: 5.534

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf05549g02006.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.5	2.7e-09	357	405	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Niben101Scf05549g02006.1 357 NSHSLAERVRREKISERMKYLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 405 58***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.01E-17	352	423	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.34E-10	352	409	No hit	No description
PROSITE profile	PS50888	15.51	354	404	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.6E-17	355	421	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.2E-6	357	405	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.2E-10	360	410	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 542 aa Download sequence Send to blast
MDMSSKNDTE QLKGNEDTAN FQLPNMSLEW QLSGTSLTSA SIGMIPKSDP TLDSFYPTIW 60 DRPTNSPNLS FYGNNVQINP STTNPHGIVE IGSGRTRGGV DRTVGMSWNP PNAMLKGGMF 120 VLPNIGMRPQ SLAQLPADSG FIERAARFSC FSGGNFSDMM NPFSIPESVK PCYSGLVPTC 180 RSEEVFASNG LNSPSAINCQ KQPMRNAVES SKDVVLHREH EINKESPLKN AKKNENFGRS 240 QGEGKEAVGL SGNESDEAEC SGRLEEMEGA REESSSKSLG SKKRKRYGQD AQPDQMKGVQ 300 QPPAEHAQDQ TEIQGEQNLN STANKPGEEN SKERSQASDP PKEEYIHIRA RRGQATNSHS 360 LAERVRREKI SERMKYLQDL VPGCNKVTGK AVMLDEIINY VQSLQRQVEF LSMKLATVNP 420 QLDFNLDGLL AKDILQSHAG PSSSLVFPPD DMTMPYTSLH ALQSSLLQSG FPGGGNCTDS 480 FRRSINSHYA SMSGGYKDTS SQVPNICDGQ LHNVVEMEFN SSAPLNSLDL SSLPPGQMKT 540 EP

Sequence ? help Back to Top

Protein Sequence Length: 542 aa Download sequence Send to blast

MDMSSKNDTE QLKGNEDTAN FQLPNMSLEW QLSGTSLTSA SIGMIPKSDP TLDSFYPTIW  60
DRPTNSPNLS FYGNNVQINP STTNPHGIVE IGSGRTRGGV DRTVGMSWNP PNAMLKGGMF  120
VLPNIGMRPQ SLAQLPADSG FIERAARFSC FSGGNFSDMM NPFSIPESVK PCYSGLVPTC  180
RSEEVFASNG LNSPSAINCQ KQPMRNAVES SKDVVLHREH EINKESPLKN AKKNENFGRS  240
QGEGKEAVGL SGNESDEAEC SGRLEEMEGA REESSSKSLG SKKRKRYGQD AQPDQMKGVQ  300
QPPAEHAQDQ TEIQGEQNLN STANKPGEEN SKERSQASDP PKEEYIHIRA RRGQATNSHS  360
LAERVRREKI SERMKYLQDL VPGCNKVTGK AVMLDEIINY VQSLQRQVEF LSMKLATVNP  420
QLDFNLDGLL AKDILQSHAG PSSSLVFPPD DMTMPYTSLH ALQSSLLQSG FPGGGNCTDS  480
FRRSINSHYA SMSGGYKDTS SQVPNICDGQ LHNVVEMEFN SSAPLNSLDL SSLPPGQMKT  540
EP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009776786.1	0.0	PREDICTED: transcription factor bHLH49-like
TrEMBL	A0A1U7WHP3	0.0	A0A1U7WHP3_NICSY; transcription factor bHLH49-like
STRING	XP_009776786.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2871	21	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	1e-93	bHLH family protein