PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf05552g08002.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 727aa MW: 78272.3 Da PI: 5.1419

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf05552g08002.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	117.8	1.4e-36	430	525	2	97
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec........eaess 78 +++k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLl+ a+pai+e+tgt++ +a ++ Niben101Scf05552g08002.1 430 PPAKRSSKDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLERAEPAIIEATGTGTVPAIAVsvngtlkiP---- 510 6799************************************************************77777444211111110.... PP TCP 79 sssasnsssgkaaksaaks 97 + ++ + ++ ++a++ Niben101Scf05552g08002.1 511 ---TTSPATN-SEGENATK 525 ...1111111.11111111 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF01730	3.9E-19	122	267	IPR002639	Urease accessory protein UreF
Pfam	PF03634	1.7E-29	435	516	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.342	436	490	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006807	Biological Process	nitrogen compound metabolic process
GO:1905182	Biological Process	positive regulation of urease activity
GO:0016151	Molecular Function	nickel cation binding

Sequence ? help Back to Top
Protein Sequence Length: 727 aa Download sequence Send to blast
MDFQFGLGSG PSKMEDVVEK IDDALQFEPN GSLLQWSQWQ LLDSVLPTGG FAHSFGLEAA 60 IQARPSKMED VVEKIDDALQ FEPNGSLLQW SQWQLLDSVL PTGGFAHSFG LEAAIQARLV 120 SGPEDLRTFV THLLENTGSL LLPFIYTLNA SPNVETWYKL DKILDATLTN EVGRKASISQ 180 GSALLRVAAA VFQEVPSLKT MREMSLTTGA VRFHHAPIFG LVCGLLGLNA ETSQKAYMFT 240 TMRDVVSAAT RLNLVGPLGA AVLQHQLAAS AEELSKKWMN RPVQEACQTS PLLDTVQGCH 300 EAPTTAMASL RTAEGYMVDS EWPLDNSKDG KVGLFLAFFF NMEDKQKIEP ENDEVNDSKI 360 LSADPLLGDS EEYTITAVGQ HVTDAEGVGP SQPPSRDIVP LLKEEPAEND LRGGTMSVGL 420 NMQLQKVEKP PAKRSSKDRH TKVEGRGRRI RMPAACAARI FQLTRELGHK SDGETIRWLL 480 ERAEPAIIEA TGTGTVPAIA VSVNGTLKIP TTSPATNSEG ENATKRRKRA ANSEFYDVHE 540 PSNFAPVAPI APQSLLPVWA VASANGLVPT TSGTTFFMVQ PPPTSTTTIA TAGPSYPPQL 600 WATPLYNIPG RPISNYVSGI SYAGVSAAEG QVSSSKSDGN VSAMAPSSSS TGVTTTTTTS 660 TATTQMLRDF SLEIYDKREL QFMHNVGSSC RSGGAKASMG SSPTSWSMGP SSLSKAAAWW 720 STAYDYY

Sequence ? help Back to Top

Protein Sequence Length: 727 aa Download sequence Send to blast

MDFQFGLGSG PSKMEDVVEK IDDALQFEPN GSLLQWSQWQ LLDSVLPTGG FAHSFGLEAA  60
IQARPSKMED VVEKIDDALQ FEPNGSLLQW SQWQLLDSVL PTGGFAHSFG LEAAIQARLV  120
SGPEDLRTFV THLLENTGSL LLPFIYTLNA SPNVETWYKL DKILDATLTN EVGRKASISQ  180
GSALLRVAAA VFQEVPSLKT MREMSLTTGA VRFHHAPIFG LVCGLLGLNA ETSQKAYMFT  240
TMRDVVSAAT RLNLVGPLGA AVLQHQLAAS AEELSKKWMN RPVQEACQTS PLLDTVQGCH  300
EAPTTAMASL RTAEGYMVDS EWPLDNSKDG KVGLFLAFFF NMEDKQKIEP ENDEVNDSKI  360
LSADPLLGDS EEYTITAVGQ HVTDAEGVGP SQPPSRDIVP LLKEEPAEND LRGGTMSVGL  420
NMQLQKVEKP PAKRSSKDRH TKVEGRGRRI RMPAACAARI FQLTRELGHK SDGETIRWLL  480
ERAEPAIIEA TGTGTVPAIA VSVNGTLKIP TTSPATNSEG ENATKRRKRA ANSEFYDVHE  540
PSNFAPVAPI APQSLLPVWA VASANGLVPT TSGTTFFMVQ PPPTSTTTIA TAGPSYPPQL  600
WATPLYNIPG RPISNYVSGI SYAGVSAAEG QVSSSKSDGN VSAMAPSSSS TGVTTTTTTS  660
TATTQMLRDF SLEIYDKREL QFMHNVGSSC RSGGAKASMG SSPTSWSMGP SSLSKAAAWW  720
STAYDYY

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00667	PBM	Transfer from GSVIVG01027588001	Download

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	3e-63	TCP family protein