PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05565g02022.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ZF-HD
Protein Properties Length: 179aa    MW: 19903 Da    PI: 8.8134
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05565g02022.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer91.11e-28963457
               ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrev 57
                                Y+eCl+NhAaslG++a+DGCgEf+ +++++   +a+l+CaACgCHRnFHR+  
  Niben101Scf05565g02022.1  9 NIYRECLRNHAASLGSYATDGCGEFTLDDNNTsPGSASLHCAACGCHRNFHRKVI 63
                              57*************************9776655699***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.2E-241062IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.2E-231161IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257746.0E-181161IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152323.1481162IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.04E-1695165IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.7E-2898166IPR009057Homeodomain-like
TIGRFAMsTIGR015651.1E-26106164IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MQGDKANDNI YRECLRNHAA SLGSYATDGC GEFTLDDNNT SPGSASLHCA ACGCHRNFHR  60
KVIYGASYSN NSSRGREIMA ADQLTDYGGG RMSAALTAEE SPRSGKKRFR TKFTTDQKEK  120
MLAFAEKLGW TLQRKDEENE TERFCREVGV SRKVFKVWMH NHKNNTSSVS TGNASSLTQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-211071681878ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009776697.11e-120PREDICTED: zinc-finger homeodomain protein 5-like
RefseqXP_016437739.11e-120PREDICTED: zinc-finger homeodomain protein 5-like
SwissprotQ9M9S01e-40ZHD4_ARATH; Zinc-finger homeodomain protein 4
TrEMBLA0A1S3XD311e-118A0A1S3XD31_TOBAC; zinc-finger homeodomain protein 5-like
TrEMBLA0A1U7W9L71e-118A0A1U7W9L7_NICSY; zinc-finger homeodomain protein 5-like
STRINGXP_009776697.11e-119(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA118652023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.26e-43homeobox protein 31