PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05618g01002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 224aa    MW: 25152.7 Da    PI: 8.4791
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05618g01002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP229.12.5e-0949762754
                       AP2 27 krkrfslgkfgtaeeAakaaiaarkkle 54
                              +++r++lg+f tae+Aa+a+++a++ + 
  Niben101Scf05618g01002.1 49 RKTRIWLGTFETAEDAARAYDEAARLMC 76
                              349*********************8775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.7741085IPR001471AP2/ERF domain
SMARTSM003801.2E-124091IPR001471AP2/ERF domain
PfamPF008472.3E-54877IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-124887IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.1E-194885IPR001471AP2/ERF domain
CDDcd000186.30E-185087No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MSVPISQLVT TNEIKKKNKE ALRFLKHFRK GQLQLAFAFI NGETTTLQRK TRIWLGTFET  60
AEDAARAYDE AARLMCGPRA RNNFPYNPNM PQTSSSKLLS ATLTAKLHKC YMASLQMAKN  120
SAQEQHQQPP PRKIQTSYAQ TAVANAGNHV PYETKPQMLM SKPTFLAQQQ EAAAGVNWGV  180
MKVEAVEHTP QFINTLEEDH IEQIIEELLD DGSIELCSVV SSHH
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009619132.11e-118PREDICTED: ethylene-responsive transcription factor ERF003-like
RefseqXP_016513393.11e-118PREDICTED: ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW57e-46ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A1S4DJ351e-117A0A1S4DJ35_TOBAC; ethylene-responsive transcription factor ERF003-like
STRINGXP_009619132.11e-117(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13622476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.12e-25ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]