PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05618g05002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 217aa    MW: 25158.4 Da    PI: 9.2983
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05618g05002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.11.3e-1573117147
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                               rg  T++E+ ++++++ ++G++ W+tIar+++ gRt++++k++w+++
  Niben101Scf05618g05002.1  73 RGHITPQEEGIIIELHGLWGNK-WSTIARYLP-GRTDNEIKNYWRTH 117
                               6778******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.9111267IPR017877Myb-like domain
SuperFamilySSF466895.24E-2315114IPR009057Homeodomain-like
SMARTSM007170.0131669IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.5E-141874IPR009057Homeodomain-like
CDDcd001670.001521967No hitNo description
PROSITE profilePS5129424.59268122IPR017930Myb domain
SMARTSM007171.4E-1372120IPR001005SANT/Myb domain
PfamPF002492.2E-1373117IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-2375121IPR009057Homeodomain-like
CDDcd001673.30E-977118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MVGMTSWGAN SDQQWRKGPW TPEEDKLLSE YDLVLSFSNI YIENLGVGEA GLNRTGKSCR  60
LRWVNYLRPG LKRGHITPQE EGIIIELHGL WGNKWSTIAR YLPGRTDNEI KNYWRTHFKK  120
KQKASVRQDK RKTQRQRNQQ QQHCITANKL SPKAEEAIMQ KSNEKIDNEY QDAVTFINYH  180
QSMDPVMDLP PVTTSSDISH AWTDTIPMDG LWGGLWN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-20171217107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Isoform MYB59-1 is induced by jasmonate (JA), salicylic acid (SA), gibberellic acid (GA), and ethylene. Also induced by cadmium (Cd). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16531467}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019234159.11e-113PREDICTED: myb-related protein 340-like
SwissprotQ4JL841e-41MYB59_ARATH; Transcription factor MYB59
TrEMBLA0A1J6KBZ41e-111A0A1J6KBZ4_NICAT; Transcription factor myb59
STRINGXP_009802593.11e-110(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30210.15e-57myb domain protein 121
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Hickman R, et al.
    Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
    Plant Cell, 2017. 29(9): p. 2086-2105
    [PMID:28827376]