PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf05618g05010.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 76aa MW: 8708.31 Da PI: 10.3907

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf05618g05010.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	101.1	4.1e-32	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLC+aeva+iifs++gklye++s Niben101Scf05618g05010.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCEAEVALIIFSNRGKLYEFCS 59 79***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	33.067	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.0E-40	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.96E-30	2	61	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.95E-38	2	65	No hit	No description
PRINTS	PR00404	4.4E-33	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.3E-26	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.4E-33	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.4E-33	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 76 aa Download sequence Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCE AEVALIIFSN RGKLYEFCSS 60 NNSIVCVFLG PCPMQR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	9e-20	1	61	1	61	MEF2 CHIMERA
6byy_B	9e-20	1	61	1	61	MEF2 CHIMERA
6byy_C	9e-20	1	61	1	61	MEF2 CHIMERA
6byy_D	9e-20	1	61	1	61	MEF2 CHIMERA
6bz1_A	9e-20	1	61	1	61	MEF2 CHIMERA
6bz1_B	9e-20	1	61	1	61	MEF2 CHIMERA
6bz1_C	9e-20	1	61	1	61	MEF2 CHIMERA
6bz1_D	9e-20	1	61	1	61	MEF2 CHIMERA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Functions with SEPALLATA2/AGL4 and SEPALLATA3/AGL9 to ensure proper development of petals, stamens and carpels, and to prevent the indeterminate growth of the flower meristem. Forms a heterodimer via the K-box domain with AGAMOUS, that could be involved in genes regulation during floral meristem development.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019227024.1	1e-36	PREDICTED: developmental protein SEPALLATA 1-like isoform X2
Refseq	XP_019227025.1	1e-36	PREDICTED: developmental protein SEPALLATA 1-like isoform X3
Swissprot	P29382	1e-35	SEP1_ARATH; Developmental protein SEPALLATA 1
TrEMBL	A0A103XKV5	5e-36	A0A103XKV5_CYNCS; Transcription factor, K-box
STRING	cassava4.1_033922m	2e-35	(Manihot esculenta)
STRING	XP_009757151.1	2e-35	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA40	24	625

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15800.1	5e-38	MIKC_MADS family protein