PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05629g00007.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 302aa    MW: 34844.9 Da    PI: 9.7975
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05629g00007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM53.67.5e-17121183106
                       NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLp.kkvka.eekewyfFskrdkkyatgkrknratksgyW 83 
                               +G+rFhPt+ el+ ++Lk+ ++g++l+ e+  +++vdiy    Pwd+  ++ ++ eek  yf ++ +k +++ +r +r+  +g+W
  Niben101Scf05629g00007.1  12 MGIRFHPTEAELI-NFLKRFLKGEPLQSESPnFRHVDIYGDqPPWDIFgSNSDHpEEKVRYFLTRLKKLKREYTRVRRTFPNGTW 95 
                               7************.9**********9887777*******87368***73333332444559999999999999************ PP

                       NAM  84 katgkdkevlskkgelvglkktL 106
                               k + k  +v++ kg++vg ++++
  Niben101Scf05629g00007.1  96 KVQTKGIPVKNGKGTVVGFRRSF 118
                               ***********99999**99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.5E-187134IPR003441NAC domain
PROSITE profilePS5100514.19510157IPR003441NAC domain
PfamPF023654.4E-812119IPR003441NAC domain
Gene3DG3DSA:3.30.420.101.1E-21208301IPR012337Ribonuclease H-like domain
SuperFamilySSF530983.41E-18209301IPR012337Ribonuclease H-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MSLFLVRREC IMGIRFHPTE AELINFLKRF LKGEPLQSES PNFRHVDIYG DQPPWDIFGS  60
NSDHPEEKVR YFLTRLKKLK REYTRVRRTF PNGTWKVQTK GIPVKNGKGT VVGFRRSFKN  120
NIPKEDFVVC RIKRNTRSEK NHGVNMEEQD VANVVGAMLH GPYEDYCTTV QXRGYCSVPN  180
QEEYKIRDNS WGKYGGTRCC QRVAPIFQSK HKQPLALLQL CVGRSSLLFQ LLHKDSMSGY  240
LAQFLSNPIF TFVGVGVEGD VEKLMCDHGS FLVNTVDLNQ FVLLYYGEYV YGKMGLKRMA  300
KA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009801092.11e-90PREDICTED: NAC domain-containing protein 90-like
RefseqXP_016510918.11e-90PREDICTED: NAC domain-containing protein 53-like
TrEMBLA0A1S4DC453e-89A0A1S4DC45_TOBAC; NAC domain-containing protein 53-like
TrEMBLA0A1U7YAE33e-89A0A1U7YAE3_NICSY; NAC domain-containing protein 90-like
STRINGXP_009801092.15e-90(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8141386
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.13e-08NAC domain containing protein 2