PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05676g03004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 251aa    MW: 29452.1 Da    PI: 7.9464
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05676g03004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding461.2e-14855148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g+W+++Ed++l+ +v+++G ++W+  a+  g++Rt+k+c++rw +yl
  Niben101Scf05676g03004.1  8 KGPWSEQEDLQLAFYVNLFGERRWDFLAKVSGLKRTGKSCRLRWVNYL 55
                              79********************************************97 PP
2Myb_DNA-binding52.79.7e-1761106148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               rg++T++E+ l+++++  +G++ W++Iar+++ gRt++++k++w++++
  Niben101Scf05676g03004.1  61 RGKMTPQEERLILELHFNWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 106
                               89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.133355IPR017930Myb domain
SuperFamilySSF466891.35E-277102IPR009057Homeodomain-like
SMARTSM007173.1E-12757IPR001005SANT/Myb domain
PfamPF002491.2E-13855IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-20962IPR009057Homeodomain-like
CDDcd001674.80E-81055No hitNo description
PROSITE profilePS5129425.10956110IPR017930Myb domain
SMARTSM007179.6E-1660108IPR001005SANT/Myb domain
PfamPF002494.1E-1561105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2363109IPR009057Homeodomain-like
CDDcd001673.70E-1063106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MAQEEARKGP WSEQEDLQLA FYVNLFGERR WDFLAKVSGL KRTGKSCRLR WVNYLHPGVK  60
RGKMTPQEER LILELHFNWG NRWSRIARKL PGRTDNEIKN YWRTHMRKKA QDDRKNKASI  120
SPSSSISNCS SYFSSNSPDV DFIPINENNE RNFYDTGGLF GVHEQSSLQN AGKKKVGDQE  180
KGKSMKVYSM DEIWKDIELS EENETKIKPI LPSTMWEYCP DSTLWMTDEE ETKMFPQFYC  240
LDNQDNSFFT G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-2651101105MYB PROTO-ONCOGENE PROTEIN
1h8a_C1e-26511024128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009770621.11e-162PREDICTED: transcription factor MYB48-like
RefseqXP_016514046.11e-162PREDICTED: transcription factor MYB48-like
SwissprotQ4JL763e-72MYBA2_ORYSJ; Myb-related protein MYBAS2
TrEMBLA0A1S4DKY01e-160A0A1S4DKY0_TOBAC; transcription factor MYB48-like
TrEMBLA0A1U7W0921e-160A0A1U7W092_NICSY; transcription factor MYB48-like
STRINGXP_009770621.11e-161(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.15e-72myb domain protein 48
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]