PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05688g10004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 542aa    MW: 61334.1 Da    PI: 5.0911
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05688g10004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS330.33.5e-1011555301374
                      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetseknsseelaalkl 83 
                               lv+lLl+cAeav  +d++l ++lL+++   ++p gd++qR+  +f+ +L++rl+   + ++  ++l   + ++++ +e+  a++ 
  Niben101Scf05688g10004.1 155 LVHLLLACAEAVGCRDTKLSDSLLTQIWPAVTPFGDSLQRVSYCFALGLQSRLTLvqHRNNAGATLIQDQVADSSRAEKREAYHW 239
                               68**************************************************998323344445555666666669999999*** PP

                      GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egpp.slRiTgvgspesg...skeeleetge 163
                               +++++P++ f++++aN aI ++  g+e++HiiD+++ +  QW +L+++L+ +p ++pp  +RiTg+ + +++    +     +++
  Niben101Scf05688g10004.1 240 LHQITPYMAFGFMAANDAICKSSRGKECLHIIDIGMLHIHQWQSLIRTLTVQPdSPPPrVVRITGILEDTHDfmeLELG---LKS 321
                               **************************************************99955555799*******66554333333...444 PP

                      GRAS 164 rLakfA..eelgvpfefnvlvak.rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe 245
                                + ++A  ++ ++++ef+v+ +  + + ++ e+L+v++gEal+Vn+v+qlh+ +++s  + +   ++L+++k+l P +v+vveq+
  Niben101Scf05688g10004.1 322 LMDEIAatSSGNIRLEFQVIKEPvSASLFTREKLDVREGEALIVNSVMQLHKYVKDSRGTLK---TILQAIKKLGPILVTVVEQD 403
                               555555114569*******8444588999*************************88887777...9******************* PP

                      GRAS 246 adhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpls 330
                               a+hn++ Fl rfle+l+yysa+fdslea+lpr+s +rik+E+   ++ei+nvva eg +r+erhe++ +Wr++l++aGF+ v l+
  Niben101Scf05688g10004.1 404 ANHNGPFFLGRFLESLHYYSAIFDSLEASLPRDSTTRIKIEKCHYAEEIQNVVAYEGLNRIERHERADQWRKQLGRAGFQIVGLK 488
                               **********************************************************************************995 PP

                      GRAS 331 ekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                  ++qa+++l+ ++sdgy++ +e+g+l+lgWk+rp++++SaW+
  Niben101Scf05688g10004.1 489 --CMSQAQMMLSVYGSDGYTLASEKGCLLLGWKGRPIMFASAWE 530
                               ..89***************************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098549.085129512IPR005202Transcription factor GRAS
PfamPF035141.2E-98155530IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MHEMNSDWVP SFQTHNQHFA IRQFCAAARM NDQQQQHSQN SISELYTYTS TPDHSTSSQE  60
EQEFVDSFFN IDSYDKDPLD HQVNLDTEEF GDFTSMLVDE YSYENLSVLT NEEPRYTMPE  120
ACSSSDDLIG AERTFDAETI SHDRVEAEVD QGLQLVHLLL ACAEAVGCRD TKLSDSLLTQ  180
IWPAVTPFGD SLQRVSYCFA LGLQSRLTLV QHRNNAGATL IQDQVADSSR AEKREAYHWL  240
HQITPYMAFG FMAANDAICK SSRGKECLHI IDIGMLHIHQ WQSLIRTLTV QPDSPPPRVV  300
RITGILEDTH DFMELELGLK SLMDEIAATS SGNIRLEFQV IKEPVSASLF TREKLDVREG  360
EALIVNSVMQ LHKYVKDSRG TLKTILQAIK KLGPILVTVV EQDANHNGPF FLGRFLESLH  420
YYSAIFDSLE ASLPRDSTTR IKIEKCHYAE EIQNVVAYEG LNRIERHERA DQWRKQLGRA  480
GFQIVGLKCM SQAQMMLSVY GSDGYTLASE KGCLLLGWKG RPIMFASAWE VHNAASSRYI  540
NG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-5016252926378Protein SCARECROW
5b3h_A2e-5016252925377Protein SCARECROW
5b3h_D2e-5016252925377Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009768414.10.0PREDICTED: DELLA protein RGL1-like
RefseqXP_016464602.10.0PREDICTED: DELLA protein RGL1-like
TrEMBLA0A1S3ZJT60.0A0A1S3ZJT6_TOBAC; DELLA protein RGL1-like
TrEMBLA0A1U7W1A50.0A0A1U7W1A5_NICSY; DELLA protein RGL1-like
STRINGXP_009768414.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA140671113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-74RGA-like 1