PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05699g00009.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 292aa    MW: 33338.4 Da    PI: 4.6713
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05699g00009.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM25.14.9e-0841103126
                       NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiy.kvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                                GfrF+Ptd+e +  +L + v+g++++ + +  ++vd+y k ePw++       ++ +   s++++    g+r++ra +      
  Niben101Scf05699g00009.1   4 LGFRFRPTDSEGL-MFLLRFVAGQEMHDAGFiTTNVDVYgKQEPWEIY------DHGIIVLSETREL---GNRTTRANQ-----F 73 
                               6**********99.7899999999988777735677*99456*****5......4566666666554...455555533.....1 PP

                       NAM  86 tgkdkevlskkgelvglkktLvfykg..rapkgektdWvmhey 126
                               t ++  v++     +g k+ L + ++    ++ +  +W+m+ey
  Niben101Scf05699g00009.1  74 T-TSSLVVN-----IGSKTNLSYKNKefYPEDQKDGHWLMKEY 110
                               2.2222333.....44444444442211233444579999999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.97E-74112IPR003441NAC domain
PfamPF023653.0E-65110IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MEQLGFRFRP TDSEGLMFLL RFVAGQEMHD AGFITTNVDV YGKQEPWEIY DHGIIVLSET  60
RELGNRTTRA NQFTTSSLVV NIGSKTNLSY KNKEFYPEDQ KDGHWLMKEY GNYRICCLFH  120
SILNVIELAN LLFXELSKVI VHKFDEDRRD YVLCTIKKLK YANSSSETST TTTLHIIFDG  180
TDEVTSSVDR DLLATNNCKG YYNMCKNSEH SETMAFQEPI VMNNNVDKPL QIVDKPTEGT  240
AFEVPNDLYQ WVGKELDELK QILDGLPKVD VAVEPLAAVE PETTYICGQH SV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016512401.11e-120PREDICTED: protein NTM1-like 9, partial
TrEMBLA0A314KLA01e-134A0A314KLA0_NICAT; Uncharacterized protein
STRINGXP_009782736.11e-118(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22191254