PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf05713g04012.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 148aa MW: 17026.3 Da PI: 9.47

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf05713g04012.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	20.4	9.1e-07	15	42	5	34
HHHHHHHHHHHHHHHHHHHHCTSCCC...T CS HLH 5 hnerErrRRdriNsafeeLrellPkaskap 34 + +E++RR++++ ++eL +l+P+ + Niben101Scf05713g04012.1 15 RKSIEKNRRNQMKALYSELYSLVPHHH--H 42 5789*********************62..3 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.8E-5	12	42	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.18E-5	14	43	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 148 aa Download sequence Send to blast
MEQCNSPSAL SKADRKSIEK NRRNQMKALY SELYSLVPHH HHSRINLERM RQRKERLTVD 60 GNPSSIRSSS ERKETQPLLP HLEIYHVDSS LDVVLITRID YQFIFNDIIR MLHEESLEVG 120 ECATGYRATR ISDRLKKIVG SGHSGAGN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009792759.1	7e-76	PREDICTED: uncharacterized protein LOC104239707
Refseq	XP_016469681.1	7e-76	PREDICTED: uncharacterized protein LOC107792022
TrEMBL	A0A1S3ZZE1	2e-74	A0A1S3ZZE1_TOBAC; uncharacterized protein LOC107792022
TrEMBL	A0A1U7Y0J4	2e-74	A0A1U7Y0J4_NICSY; uncharacterized protein LOC104239707
STRING	XP_009792759.1	3e-75	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5105	21	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	4e-17	bHLH family protein