PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05717g00005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 139aa    MW: 15439.1 Da    PI: 4.2117
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05717g00005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH110.0007822433354
                              .TTS-STCHHHHHHHHHHHHHH CS
                       HLH 33 apskKlsKaeiLekAveYIksL 54
                              ++s+ ++Ka+i  +A +YI +L
  Niben101Scf05717g00005.1 22 TNSPSVNKASIIVHASKYIEEL 43
                              45667**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.7E-41155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.87E-51157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MGSKDQKNAL LNQHLEQLGS ITNSPSVNKA SIIVHASKYI EELKERIDKL NEDVSTSQPS  60
HIDDENSLPL NCPGLLVSIL EAFEELGLEL SDTRVSCSDS FRLEAVSETE GQIDRVDAQM  120
VKQSVLEAIR NWSQSNEQD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009617115.12e-90PREDICTED: transcription factor bHLH61-like isoform X1
RefseqXP_016462125.12e-90PREDICTED: transcription factor bHLH61-like isoform X1
TrEMBLA0A1S3ZCE75e-89A0A1S3ZCE7_TOBAC; transcription factor bHLH61-like isoform X1
STRINGXP_009617115.19e-90(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2945911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.14e-07beta HLH protein 93