PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf05749g00010.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 224aa MW: 24593.8 Da PI: 7.3442

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf05749g00010.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	96.2	3.5e-30	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 +C++C++lr++C+++C+l++ + p++q++++ +v+k+FG++ ++++l+++pe++r+++++sl++e++ r+ +Pv+Gavg++ Niben101Scf05749g00010.1 2 SCNGCRILRKGCNENCILRQSLqgiesPHAQANATVFVAKFFGRAGLMSFLSSVPESQRPALFQSLLFESCGRTVNPVHGAVGLL 86 6********************************************************************************** PP DUF260 81 lklqqqleqlkaelall 97 ++++++++q+++e++l Niben101Scf05749g00010.1 87 WTGNWHVCQSAVETVLK 103 *********998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.626	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.5E-26	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MSCNGCRILR KGCNENCILR QSLQGIESPH AQANATVFVA KFFGRAGLMS FLSSVPESQR 60 PALFQSLLFE SCGRTVNPVH GAVGLLWTGN WHVCQSAVET VLKGGVLRPL PEFSGVTALP 120 ESDSVSEAND VDLFRSQSFN FRSKRKVMDE VAEDLDLGLS SGFPVKMTAT GGRMNRRTEK 180 RREATPSLNS DESDTTTLES GFMCHQNPQQ GQLGDDTKLL RLFF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019233192.1	1e-160	PREDICTED: LOB domain-containing protein 37-like
Swissprot	Q9FN11	8e-71	LBD37_ARATH; LOB domain-containing protein 37
TrEMBL	A0A1J6KXX9	1e-159	A0A1J6KXX9_NICAT; Lob domain-containing protein 37
STRING	XP_009795798.1	1e-157	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA966	24	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	3e-73	LOB domain-containing protein 37

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]