PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05761g01038.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 302aa    MW: 33672.2 Da    PI: 6.8523
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05761g01038.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP100.72.7e-3151182289
                       TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..................... 65 
                                g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak++i+el+ +                     
  Niben101Scf05761g01038.1  51 FGGKDRHSKVCTVRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKHEIDELPPLqippgslnpnlypmfgigasq 135
                               689*************************************************************555554444444444333322 PP

                       TCP  66 .....ssssaseceaesssssasnsssg..............................k 89 
                                    +             +++s  s++                              +
  Niben101Scf05761g01038.1 136 inkevG------------IKNTSGTSINwdvplepsnnvalpynsnflkwdpsnlslaH 182
                               222220............22222222224444444444444444444444443333422 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.7E-2853128IPR005333Transcription factor, TCP
PROSITE profilePS5136932.01953111IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MIAREVNKQE GDPNEDGNKS IPNNKASSSS NSTTSWTRLK DPRIVRVSRA FGGKDRHSKV  60
CTVRGLRDRR VRLSVPTAIQ LYDLQDRLGL NQPSKVVDWL LNAAKHEIDE LPPLQIPPGS  120
LNPNLYPMFG IGASQINKEV GIKNTSGTSI NWDVPLEPSN NVALPYNSNF LKWDPSNLSL  180
AHSENHHHVT SSSHQHEDIQ NINLMSMPIG SQVLVYPQGL PQSFFHPHNI NAGPSSDQFD  240
AREINFQMLS TSGSENLLSS ANSYIQSIDS TSQSHVRPFH FLPSQNSEGR EPNEDREFHN  300
SN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-1958112155Putative transcription factor PCF6
5zkt_B5e-1958112155Putative transcription factor PCF6
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009792504.10.0PREDICTED: transcription factor TCP13-like
TrEMBLA0A1U7XZU90.0A0A1U7XZU9_NICSY; transcription factor TCP13-like
STRINGXP_009792504.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8212499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.11e-46plastid transcription factor 1