PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05830g01017.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 159aa    MW: 18574 Da    PI: 9.7591
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05830g01017.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF39.47.8e-1322501442
                              HHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                    SRF-TF 14 skRrngilKKAeELSvLCdaevaviifss 42
                               kR   ++K AeELS+LC++++a+iifs+
  Niben101Scf05830g01017.1 22 LKRTRSLFKQAEELSILCAIQIAIIIFSP 50
                              69**************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006610.975149IPR002100Transcription factor, MADS-box
SMARTSM004327.0E-5160IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.15E-131393IPR002100Transcription factor, MADS-box
PfamPF003192.5E-101450IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MASKKHKSSS EMSESEKKSL ILKRTRSLFK QAEELSILCA IQIAIIIFSP WETSPIYWPS  60
EGQAMEIFKN YLKKPEVVRM KKLIKLETYL SDKEMAKEED IRKMEQKNEE MEMEFLLSEL  120
VKGKSMNELD VRQTKGLLKL VALKKAKLEE MKKILADQN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019246472.11e-102PREDICTED: agamous-like MADS-box protein AGL90
TrEMBLA0A1J6IEW01e-100A0A1J6IEW0_NICAT; Agamous-like mads-box protein agl36
STRINGXP_009771864.17e-88(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37820129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26650.15e-07AGAMOUS-like 36