PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf05844g00001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 279aa MW: 29753.8 Da PI: 6.4341

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf05844g00001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	84.9	1.9e-26	1	99	24	89
TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg..................... 88 ++a+caar+F+L++eLG ++d++tieWLlqqa+pai+++tgt++++a+++ ++s +ss+ + s++ Niben101Scf05844g00001.1 1 MPALCAARVFQLTRELGNKSDGETIEWLLQQAEPAIIAATGTGTNPANFStLNVSLRSSGTTISAPpsksaplfihggantmlgfhh 87 9**********************************************9997777777777733333333334444444444444444 PP TCP 89 ...........k 89 + Niben101Scf05844g00001.1 88 qlsnggfgediD 99 444444443330 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	6.3E-25	1	126	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	20.552	1	39	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MPALCAARVF QLTRELGNKS DGETIEWLLQ QAEPAIIAAT GTGTNPANFS TLNVSLRSSG 60 TTISAPPSKS APLFIHGGAN TMLGFHHQLS NGGFGEDIDE NNYMKKRFRE DTSDATSPSG 120 EKPERTVEHG HEPGSDSKPR SSQTSSFIPA PAMWAVAPGA GNVGNAFWML PVSGGTSSTT 180 ASVGVAQPDH QLWRSRIGGF EFPGGSRFSP VQLGSMVLQQ SQPVQQLGLG VRETNMGILS 240 SMNNAYNSSG NNRVDLSMNL EQHHHHQNSG DENHKDSQS

Functional Description ? help Back to Top
Source	Description
UniProt	Can specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269\|PubMed:21297037}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019242940.1	0.0	PREDICTED: transcription factor TCP8-like
Swissprot	Q9C518	3e-54	TCP8_ARATH; Transcription factor TCP8
TrEMBL	A0A1J6IIR7	0.0	A0A1J6IIR7_NICAT; Transcription factor tcp8
STRING	XP_009775051.1	1e-176	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	1e-47	TCP family protein

Publications ? help Back to Top
Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]