PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05911g00004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 196aa    MW: 22481.2 Da    PI: 6.8738
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05911g00004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like941.2e-292779254
                   G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54
                              prlrWtpeLH+ F+eave+ GGs+kAtPk+i ++m vkgL ++hvkSHLQ+YR
  Niben101Scf05911g00004.1 27 PRLRWTPELHQLFIEAVEHHGGSDKATPKRIQQMMAVKGLKISHVKSHLQMYR 79
                              8**************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.3962383IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-272481IPR009057Homeodomain-like
SuperFamilySSF466892.04E-162783IPR009057Homeodomain-like
TIGRFAMsTIGR015573.7E-232780IPR006447Myb domain, plants
PfamPF002493.8E-102879IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MMEFSIMKNS SSQKISRVRQ YKKSSVPRLR WTPELHQLFI EAVEHHGGSD KATPKRIQQM  60
MAVKGLKISH VKSHLQMYRN LKERASINIA RSSFPQQIKP GSQLSYKAGV SDYGDQIAEN  120
MYCFDYQEAQ GSLSSGMTKE EEEGEISEFP QANGECEREI NFWPNLDDYQ HSQSDNSIKD  180
NSHINLDLSI SSCFYC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-182884460Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-182884460Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-182884460Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-182884460Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-182884460Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-182884460Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-182884460Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-182884460Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009785228.11e-121PREDICTED: transcription repressor KAN1-like
TrEMBLA0A1U7X3171e-120A0A1U7X317_NICSY; transcription repressor KAN1-like
STRINGXP_009785228.11e-121(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA94591325
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.14e-26G2-like family protein