PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05912g02001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NF-X1
Protein Properties Length: 1154aa    MW: 125107 Da    PI: 8.2547
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05912g02001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X116.22.3e-05480495318
                  zf-NF-X1   3 kHkCqklCHeGpCppC 18 
                                H+Cq+ CH G+C pC
  Niben101Scf05912g02001.1 480 VHRCQAVCHSGDCAPC 495
                               6*************** PP
2zf-NF-X118.54.2e-06574592119
                  zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                               CG+H+C++lCH G CppC 
  Niben101Scf05912g02001.1 574 CGQHSCESLCHSGHCPPCL 592
                               ******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578502.24E-7177248No hitNo description
PROSITE profilePS500168.831186247IPR019787Zinc finger, PHD-finger
PROSITE profilePS500899.48189245IPR001841Zinc finger, RING-type
PROSITE patternPS013590189244IPR019786Zinc finger, PHD-type, conserved site
CDDcd060083.55E-6278339No hitNo description
SMARTSM004380.023301319IPR000967Zinc finger, NF-X1-type
PfamPF014228.7303318IPR000967Zinc finger, NF-X1-type
CDDcd060086.82E-11346394No hitNo description
SMARTSM004380.063356375IPR000967Zinc finger, NF-X1-type
PfamPF014220.0033356373IPR000967Zinc finger, NF-X1-type
CDDcd060082.22E-8410455No hitNo description
SMARTSM004385.4E-4420439IPR000967Zinc finger, NF-X1-type
PfamPF014225.5E-4420437IPR000967Zinc finger, NF-X1-type
CDDcd060084.31E-13468516No hitNo description
PfamPF014224.3E-4472495IPR000967Zinc finger, NF-X1-type
SMARTSM004381.7E-4478497IPR000967Zinc finger, NF-X1-type
SMARTSM00438190536570IPR000967Zinc finger, NF-X1-type
PfamPF0142219536547IPR000967Zinc finger, NF-X1-type
CDDcd060083.43E-9564616No hitNo description
SMARTSM004382.0E-4574593IPR000967Zinc finger, NF-X1-type
PfamPF014221.0E-4574591IPR000967Zinc finger, NF-X1-type
CDDcd060084.92E-5621669No hitNo description
SMARTSM004380.99631649IPR000967Zinc finger, NF-X1-type
PfamPF01422120631647IPR000967Zinc finger, NF-X1-type
SMARTSM004380.025684714IPR000967Zinc finger, NF-X1-type
PfamPF014225.8E-4684699IPR000967Zinc finger, NF-X1-type
PfamPF014224.6716742IPR000967Zinc finger, NF-X1-type
SMARTSM004380.021723744IPR000967Zinc finger, NF-X1-type
Gene3DG3DSA:3.30.70.3302.3E-49631008IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1154 aa     Download sequence    Send to blast
MSGRHMLNRF DLGRSNLSLD RDIGYFQILS QNMSFSSAQN NRRNNNSNRP SNNPVQSARR  60
EWLPRGSTAT TTVSAAPVTT TVTTTVVSPV FNINGSSSAG NGREKDDVSV APVNRPNQRY  120
LGPNLSKGPT YARRERGRGR ENHNYQENRV ERAVNGRINQ RKHTRLKDPN LPQLVQEIQE  180
KLLKGNIECM ICYDMVRRSA PVWSCSSCYS IFHLNCIKKW ARAPTSGDTS AEKNQGFNWR  240
CPGCQSVQLT SSKEIRYICF CGKRPDPPSD LYLTPHSCGE PCGKKLEKEL PGHGLSEEDL  300
CPHVCVLQCH PGPCPPCKAF APARSCPCGK EVITTRCSDC KSVLTCGQQC GKLLDCGRHW  360
CEQTCHVGPC GHCQVIVNAY CFCKKKTEVL LCGDMGVKGD IKIEDGVFSC SSACGRKLSC  420
GNHVCLELCH PGPCGDCALL PSKIKTCCCG KSSLEDERRS CLDPIPTCSK VCGKSLKCRV  480
HRCQAVCHSG DCAPCLVPVT QRCRCGSTSR TVECYKTQAE DEKFTCDRPC GQKKNCGRHR  540
CSERCCPLSN PKNSVTGGWN PHFCSMPCEK KLRCGQHSCE SLCHSGHCPP CLETIFTDLT  600
CACGRTSIPP PLPCGTPSPS CQLPCSVPQP CGHPSTHSCH FGDCLPCAVP VAKECVGGHV  660
ILRNIPCGSK DIRCNKLCGK TRQCGLHACA RTCHSSPCDF SAGPINGSRA SCGQTCGAPR  720
RDCRHTCTAL CHPSSPCPDV RCEFPVTITC SCGRVTANVP CDAGGPIVDS VFEASIIHKL  780
PSPLQPIEIN GKKVPLGQRK LTCDDECAKM EKKKVLSDAF GITPPNLEAL HFGDAAVSEV  840
LGDLLRRDPK WVFSIEERCK CLVLGRSRGG VNALKVHVFC PMLKEKRDAV RLIAARWKLS  900
VNAAGWEPKR FITVHVTPKS KAPPRILGAK GCTVNNIAQP AVFDSLVDMD PRLVVALFDL  960
PRDADISALV LRFGGECELV WLNDKNALAV FSDPARAATA MRRLDQGSAY CGAAVVPQSG  1020
AASAVTSVTN AWGVSGAAKD GGGAAALKGN PWKKAVVQEP RLRESPWDPE EWSKNPTDSA  1080
PSAWRTNEAT TAASSNRWSV LEPEMTSNLP RASITIKEPV SEPGVGGSAL PPKPQDVGVD  1140
EMADVVDDWE KAYD
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009767499.10.0PREDICTED: NF-X1-type zinc finger protein NFXL1
RefseqXP_016451170.10.0PREDICTED: NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A1S3YGC00.0A0A1S3YGC0_TOBAC; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A1U7VYN90.0A0A1U7VYN9_NICSY; NF-X1-type zinc finger protein NFXL1
STRINGXP_009767499.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA93132428
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1