PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05919g00004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NF-YA
Protein Properties Length: 115aa    MW: 12878.8 Da    PI: 10.2318
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05919g00004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA62.51.2e-196831258
                 CBFB_NFYA 12 qrIlkRRqkRakleeekk...............................ldeksrkpylheSRhkhAlrRpRgsgGrF 58
                              ++Il+RRq+ ak+e+e+k                               l e+  +pylheSRh hAl+R+Rg+gGrF
  Niben101Scf05919g00004.1  6 HGILRRRQSHAKAESENKllkarkvacpikscnlclrlcvsstktlgvlLYENILQPYLHESRHLHALKRARGCGGRF 83
                              89**********************************************9889*************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.1E-7186IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115220.515186IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.1E-16683IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 115 aa     Download sequence    Send to blast
MQNSNHGILR RRQSHAKAES ENKLLKARKV ACPIKSCNLC LRLCVSSTKT LGVLLYENIL  60
QPYLHESRHL HALKRARGCG GRFQSKKNDE YGDKSLATVN IDSNKIEVTS SENAS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019226976.14e-42PREDICTED: nuclear transcription factor Y subunit A-7-like
TrEMBLA0A314KQL39e-41A0A314KQL3_NICAT; Nuclear transcription factor y subunit a-7
STRINGXP_009782268.11e-39(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.18e-19nuclear factor Y, subunit A7