PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf05923g05004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 365aa    MW: 40790.2 Da    PI: 9.1575
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf05923g05004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.31.3e-082733121054
                               HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                       HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                               rrRR++i +++  L++++P        K++ a++L +A +Y+k L
  Niben101Scf05923g05004.1 273 RRRREKISEKIKILQKMVPGG-----SKMDTASMLDEAANYLKFL 312
                               9******************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.977263312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-12269318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.09E-13270326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.38E-10271317No hitNo description
Gene3DG3DSA:4.10.280.108.7E-13273321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-6273312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MEFGATFDPI HVLSSWNIPQ RREAATKLAA DSVSGKSRTG PSRDCTKIGP SSFRSQNNIV  60
PNLGDNLSAV CGLMADNLGC NDPITKSRSF DCLLSATNTS NYMDKSVEDD GISMIFCDDS  120
KRLWNINKDN IAVSSGECAI DASILKPIDA NDSNNIECPI NETDQYNNPI RSLEAKRHMT  180
KRRRYNRALL QPATPVLSSY PKSNPIQETK IRKYEHQSSA NDERDSEAIT QMKGMIYSAA  240
AFRPMSFGTE VEAEKPKRKN VRISTDPQTG AARRRREKIS EKIKILQKMV PGGSKMDTAS  300
MLDEAANYLK FLRSQIKAME AFGHKIDPLI MTNISSLSSI PFNYPFPRQP HFPIQLDNPV  360
QRPYS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1256275KRKNVRISTDPQTGAARRRR
2272277RRRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009790621.10.0PREDICTED: transcription factor bHLH87-like
RefseqXP_016461568.10.0PREDICTED: transcription factor bHLH87-like
TrEMBLA0A1S3ZB120.0A0A1S3ZB12_TOBAC; transcription factor bHLH87-like
TrEMBLA0A1U7XLX80.0A0A1U7XLX8_NICSY; transcription factor bHLH87-like
STRINGXP_009790621.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43502242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.16e-42bHLH family protein