PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06008g01006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 327aa    MW: 36593.6 Da    PI: 7.4296
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06008g01006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP951.5e-2952151389
                       TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasns 85 
                               g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk ++WL+++ k++i++l+ ++ ++  ++  + ++++  a+n 
  Niben101Scf06008g01006.1  52 GGKDRHSKVCTIRGLRDRRIRLSLPTAIQLYDLQDRLGLNQPSKVVDWLIEATKHEIDKLPPLQIPPGYFAqfQ-DDHHFDAANL 135
                               78*************************************************************77777555321.2222222211 PP

                       TCP  86 ssg............k 89 
                               +++            +
  Niben101Scf06008g01006.1 136 REKskvidtdtvygkN 151
                               1112333343333221 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136929.37853111IPR017887Transcription factor TCP subgroup
PfamPF036342.4E-2753161IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MINSSGNSFQ AKQESGGTNN SKLTSKATTS TSSRQWGGFK NPRIVRVSRT FGGKDRHSKV  60
CTIRGLRDRR IRLSLPTAIQ LYDLQDRLGL NQPSKVVDWL IEATKHEIDK LPPLQIPPGY  120
FAQFQDDHHF DAANLREKSK VIDTDTVYGK NKSIASNEQE NQEEIGGYVP QISAQSFFPL  180
GNRSPNLPGL MNNSMPFNSY YPWEPNSSLS LAHFGQHQTE ESSQNNFPLS LASSLSLPSG  240
SQLYYNPTAT TFSPMISPYM TNYTIGNDPR AQLNHFHFLS SSSQHILPNP PVSTLNLIKP  300
FSLNDDPRWI HSREDDVDSQ PHEGGDN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-1858112155Putative transcription factor PCF6
5zkt_B1e-1858112155Putative transcription factor PCF6
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009781748.10.0PREDICTED: transcription factor TCP5-like
RefseqXP_016450456.10.0PREDICTED: transcription factor TCP5-like
TrEMBLA0A1S3YDZ20.0A0A1S3YDZ2_TOBAC; transcription factor TCP5-like
TrEMBLA0A1U7WT270.0A0A1U7WT27_NICSY; transcription factor TCP5-like
STRINGXP_009781748.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8212499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.12e-46TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5