PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06009g00004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 436aa    MW: 49453.3 Da    PI: 8.4721
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06009g00004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.000184103221
                               EETTTTEEESSHHHHHHHHH CS
                   zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                               +C+ CgksF ++  L  H++
  Niben101Scf06009g00004.1  84 VCKECGKSFQSWKALFGHMK 103
                               6******************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.1E-5531IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.29E-10831No hitNo description
PfamPF139122.3E-5932IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.45931IPR007087Zinc finger, C2H2
SMARTSM003550.13931IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SuperFamilySSF576674.29E-1078105No hitNo description
PROSITE profilePS5015710.11883110IPR007087Zinc finger, C2H2
SMARTSM003550.007883105IPR015880Zinc finger, C2H2-like
PfamPF139121.9E-885107IPR007087Zinc finger, C2H2
PROSITE patternPS00028085105IPR007087Zinc finger, C2H2
PfamPF139122.9E-11298322IPR007087Zinc finger, C2H2
SuperFamilySSF576671.76E-7298320No hitNo description
SMARTSM003550.19298320IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.762298325IPR007087Zinc finger, C2H2
PROSITE patternPS000280300320IPR007087Zinc finger, C2H2
SuperFamilySSF576671.76E-7364391No hitNo description
PfamPF139127.8E-10369392IPR007087Zinc finger, C2H2
SMARTSM003550.16369391IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.743369391IPR007087Zinc finger, C2H2
PROSITE patternPS000280371391IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MKEDQEQKYL CKFCNKSFSC GRSLGGHMRS HLINSSVDQT KKKLAFIETS SPIAEYGLRE  60
NPKKTSKFAE SNEDTNLVPN QNKVCKECGK SFQSWKALFG HMKCHSEKII SSMNSTVEED  120
SWNNNANYAV QNQVMDIQSD TETATPNKKK RSSRKNKRYI TTTTSSTVTE IEQEQEEVAM  180
SLIILSRDSR NGVGLNFFTD ENGSKISKNG KPEKNERSKS NARTLRISRN GYKIDKSEES  240
DDKQKKIKED KESGLEESEI EIHFKKRNIE MNECDISVDS NTKKLRDQDS DSEKKIKFEC  300
TSCNKSFHSY QALGGHRASH KRTKGCENII DEIEHMQNLA ANNKIRNTKN CSNDSTIETS  360
SVSKKIKGYE CPICFKIFQS GQALGGHKRS HLIAEAKSNN QAVILEKPTP EIRDFLDLNL  420
PAPVEEESSE HVGFQK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009801846.10.0PREDICTED: zinc finger protein ZAT9-like
RefseqXP_016513354.10.0PREDICTED: zinc finger protein ZAT9-like
TrEMBLA0A1S4DJ900.0A0A1S4DJ90_TOBAC; zinc finger protein ZAT9-like
TrEMBLA0A1U7YIT40.0A0A1U7YIT4_NICSY; zinc finger protein ZAT9-like
STRINGXP_009801846.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44812241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.11e-25C2H2-like zinc finger protein