PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf06009g00028.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 474aa MW: 53522.6 Da PI: 9.6353

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf06009g00028.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	48.9	1.2e-15	199	245	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ ErrRRdriN+++ L++l+P+a K +Ka++L ++++Y+k+Lq Niben101Scf06009g00028.1 199 VHNQSERRRRDRINEKMKVLQKLVPNA-----SKTDKASMLDEVIKYLKQLQ 245 5***********************9.....7****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.1E-16	194	262	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.536	195	244	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.49E-18	198	268	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.6E-13	199	245	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.59E-14	200	249	No hit	No description
SMART	SM00353	2.8E-16	201	250	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.7	271	314	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 474 aa Download sequence Send to blast
MSHSWNHRQQ RQEQTVELPE EENRYPHVHN QQPQNHLVPI LGNNLPNEQE KHTWERASDT 60 LESVVHQATN CQMQNLDLKG SDKNKANINT ENIVKQETIG GVVKKRMRSD SDPQLYGTSG 120 RLVGEFHKNI FDQNAESSAR DTVMTWPNYH SLDESSRSFK SKATFNEDST CHIAGLENKE 180 EERETKGSNT LRRSRTAAVH NQSERRRRDR INEKMKVLQK LVPNASKTDK ASMLDEVIKY 240 LKQLQAQIQL ISSARNMESQ MMMQLPHIQM PLLARMGMAP GMLNNMMTAN LTDKASMLDE 300 VIKYLKQLQA QIQLISSARN MESQMMMQLP HIQMPLLARM GMAPGMLNNM MTANLVRAAA 360 ATTPHQSFTA PFIYPTSIAT SCPPFMSPAF AMAPTIPTPP QANGDANASR AAVAPGVSNS 420 FPFNDPRSAF LAQSMNMEFN NQLAAQYMQQ ANNQSMQTRS KNLNQGNLNR RQTE

Sequence ? help Back to Top

Protein Sequence Length: 474 aa Download sequence Send to blast

MSHSWNHRQQ RQEQTVELPE EENRYPHVHN QQPQNHLVPI LGNNLPNEQE KHTWERASDT  60
LESVVHQATN CQMQNLDLKG SDKNKANINT ENIVKQETIG GVVKKRMRSD SDPQLYGTSG  120
RLVGEFHKNI FDQNAESSAR DTVMTWPNYH SLDESSRSFK SKATFNEDST CHIAGLENKE  180
EERETKGSNT LRRSRTAAVH NQSERRRRDR INEKMKVLQK LVPNASKTDK ASMLDEVIKY  240
LKQLQAQIQL ISSARNMESQ MMMQLPHIQM PLLARMGMAP GMLNNMMTAN LTDKASMLDE  300
VIKYLKQLQA QIQLISSARN MESQMMMQLP HIQMPLLARM GMAPGMLNNM MTANLVRAAA  360
ATTPHQSFTA PFIYPTSIAT SCPPFMSPAF AMAPTIPTPP QANGDANASR AAVAPGVSNS  420
FPFNDPRSAF LAQSMNMEFN NQLAAQYMQQ ANNQSMQTRS KNLNQGNLNR RQTE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	203	208	ERRRRD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009801833.1	0.0	PREDICTED: transcription factor PIF7
TrEMBL	A0A1U7YFB6	0.0	A0A1U7YFB6_NICSY; transcription factor PIF7
STRING	XP_009801833.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5437	17	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	8e-31	bHLH family protein