PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06023g00003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 180aa    MW: 20590.2 Da    PI: 9.375
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06023g00003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM33.71e-10212718128
                       NAM  18 yLkkkvegkkleleev.ikevdiy.kvePwdLpk....kvkaeekewy.fFskrdkkyatgkrknr.atksgyWkatgkdkevls 94 
                               +L + ++g++++ + +  ++vd+y k e w++      + + e++  y +F+++ kk++ + r +r + ++g+Wk+  k k v+ 
  Niben101Scf06023g00003.1   2 FLLRFIAGQEMHDAGFiTTNVDVYgKQESWEIYDlgvpCGDDEDSTSYrYFITKLKKKS-NARYHRsVGNKGTWKQDNKGKLVHY 85 
                               78888889997776773566799844589999633454333344444424444444444.5677775888*********999999 PP

                       NAM  95 k......kgel..vglkktLvfykg..rapkgektdWvmheyrl 128
                               k      +  +  +g k+ L + ++    ++ +  +W+m+ey+l
  Niben101Scf06023g00003.1  86 KnlgkssS--VvnIGSKTNLSYKNKefYPEDQKDGHWLMKEYEL 127
                               87765433..155*********95532455666789******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100516.9861150IPR003441NAC domain
SuperFamilySSF1019415.1E-102148IPR003441NAC domain
PfamPF023652.5E-739127IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MFLLRFIAGQ EMHDAGFITT NVDVYGKQES WEIYDLGVPC GDDEDSTSYR YFITKLKKKS  60
NARYHRSVGN KGTWKQDNKG KLVHYKNLGK SSSVVNIGSK TNLSYKNKEF YPEDQKDGHW  120
LMKEYELSKV ILHKFDQDRR DYVLCAIKKL KHVNSSSETS TITTLNNVSK GTDEVTGSVG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016512401.11e-113PREDICTED: protein NTM1-like 9, partial
TrEMBLA0A1S4DGC11e-111A0A1S4DGC1_TOBAC; protein NTM1-like 9
STRINGXP_009774958.11e-112(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22191254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.22e-06NAC domain containing protein 47