PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf06027g00002.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WOX

Protein Properties

Length: 383aa MW: 42361.9 Da PI: 7.4521

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf06027g00002.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.7	1.8e-17	50	110	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++ +eq+++Le+ F++ +p ++e++++ +kl ++ +++V++WFqNr+ + k+ Niben101Scf06027g00002.1 50 KPRWNPRPEQIRILEAIFNSgMVNPPRDEIRKIRAKLqeygQVGDANVFYWFQNRKSRSKH 110 89***************99***********************************995 PP
2	Wus_type_Homeobox	111.7	3.8e-36	49	112	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +++RW+P+peQi+iLe++++sG+++P+++ei++i+a+L+eyG+++d+NVfyWFQNrk+R+++kq Niben101Scf06027g00002.1 49 PKPRWNPRPEQIRILEAIFNSGMVNPPRDEIRKIRAKLQEYGQVGDANVFYWFQNRKSRSKHKQ 112 689***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.13E-12	46	115	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.382	46	111	IPR001356	Homeobox domain
SMART	SM00389	4.9E-9	48	115	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.4E-6	49	118	IPR009057	Homeodomain-like
CDD	cd00086	5.08E-8	49	112	No hit	No description
Pfam	PF00046	4.4E-15	50	110	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence Send to blast
MASSNRHWPS MFKSKPCNQW QHDINSSLIQ RAPCNPGGGG GCEERSPEPK PRWNPRPEQI 60 RILEAIFNSG MVNPPRDEIR KIRAKLQEYG QVGDANVFYW FQNRKSRSKH KQRHLQNKAQ 120 QTHNNTNITN SHVAITAPTS SSSSSDKSSP NSTGHHKSSL TFSIGSANVM DLLNSPTASV 180 NQQQQQQPNY NFQSANNEFL STEPFFFTVQ PPTPTQSPDA ITQGFCIPDS TGFSHVSNSS 240 GHFFLSEWMG ISQTPSKKAE DEKINLQSQL NYAVTSASTT NTHSTVFPLT STTIPTISHI 300 QGVVEPADAG PTRSTVYIND VAFEVGFGPF NVREVFGDDA VLIHSSGEPL ITNEWGLTLQ 360 PLQHGAFYYL LRTSTPSNTI DLI

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence Send to blast

MASSNRHWPS MFKSKPCNQW QHDINSSLIQ RAPCNPGGGG GCEERSPEPK PRWNPRPEQI  60
RILEAIFNSG MVNPPRDEIR KIRAKLQEYG QVGDANVFYW FQNRKSRSKH KQRHLQNKAQ  120
QTHNNTNITN SHVAITAPTS SSSSSDKSSP NSTGHHKSSL TFSIGSANVM DLLNSPTASV  180
NQQQQQQPNY NFQSANNEFL STEPFFFTVQ PPTPTQSPDA ITQGFCIPDS TGFSHVSNSS  240
GHFFLSEWMG ISQTPSKKAE DEKINLQSQL NYAVTSASTT NTHSTVFPLT STTIPTISHI  300
QGVVEPADAG PTRSTVYIND VAFEVGFGPF NVREVFGDDA VLIHSSGEPL ITNEWGLTLQ  360
PLQHGAFYYL LRTSTPSNTI DLI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009793302.1	0.0	PREDICTED: WUSCHEL-related homeobox 9-like isoform X2
Refseq	XP_016489291.1	0.0	PREDICTED: WUSCHEL-related homeobox 9-like
TrEMBL	A0A1S4BK94	0.0	A0A1S4BK94_TOBAC; WOX9
TrEMBL	A0A1U7XMM4	0.0	A0A1U7XMM4_NICSY; WUSCHEL-related homeobox 9-like isoform X2
STRING	XP_009793301.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5942	23	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33880.1	5e-59	homeobox-3