PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf06030g00002.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 354aa MW: 39516.1 Da PI: 6.7918

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf06030g00002.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.8	0.00046	218	256	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq Niben101Scf06030g00002.1 218 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 256 6677889999999999998.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.611	206	255	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.81E-6	216	260	No hit	No description
SuperFamily	SSF47459	4.97E-10	216	266	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.1E-7	220	262	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MNRGVMQKPP VQQMMGGSPN WWNINNMRPP TSHQQITATS VPSLLAPNNN HFSPTVPLPS 60 PPWNDNQEQL PESWSQLLLG GLVGEEEKPV HLNNMHAAVK KLENNWEEQS TFLSQADDSV 120 IDVNQKNYMY EHVNNVDFHH QTEITVKPTW SQMMPLSSPN SCVTTLSSNM LDFSNNKSDT 180 RHPPPDHSSE CNSRATTGAP NKKARVQPSS TQSTFKVRKE KLGDRITALH QLVSPFGKTD 240 TASVLLEAIG YIRFLQSQIE ALSLPYLGSG SGNMRQQHQQ SVQERNNLFP EDPGQLSNDN 300 CLKRKATSEQ DYHEESKKDL RSRGLCLVPL SCTLQVGSDN GADYWAPAFG GGFR

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MNRGVMQKPP VQQMMGGSPN WWNINNMRPP TSHQQITATS VPSLLAPNNN HFSPTVPLPS  60
PPWNDNQEQL PESWSQLLLG GLVGEEEKPV HLNNMHAAVK KLENNWEEQS TFLSQADDSV  120
IDVNQKNYMY EHVNNVDFHH QTEITVKPTW SQMMPLSSPN SCVTTLSSNM LDFSNNKSDT  180
RHPPPDHSSE CNSRATTGAP NKKARVQPSS TQSTFKVRKE KLGDRITALH QLVSPFGKTD  240
TASVLLEAIG YIRFLQSQIE ALSLPYLGSG SGNMRQQHQQ SVQERNNLFP EDPGQLSNDN  300
CLKRKATSEQ DYHEESKKDL RSRGLCLVPL SCTLQVGSDN GADYWAPAFG GGFR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016495441.1	0.0	PREDICTED: transcription factor bHLH68-like
Swissprot	Q8S3D1	2e-97	BH068_ARATH; Transcription factor bHLH68
TrEMBL	A0A1S4C2P2	0.0	A0A1S4C2P2_TOBAC; transcription factor bHLH68-like
STRING	XP_009777548.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1519	22	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	1e-97	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Le Hir R, et al. AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana. Physiol Plant, 2017. 160(3): p. 312-327 [PMID:28369972] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]