PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06096g01013.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 182aa    MW: 20682 Da    PI: 9.775
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06096g01013.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM40.48.8e-1375159388
                       NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                               p +rF Ptd  l+ ++Lk+ ++g++l+ e  i+  +iy    Pw++  +   eek  yf s+ +k++++ kr  r+ ++g+Wka+
  Niben101Scf06096g01013.1  75 PSVRFYPTDAKLI-YFLKQFLKGESLPSECPIRLGEIYGDrPPWEISDH--PEEKIAYFISPLKKRKESHKRFCRTCANGTWKAQ 156
                               789**********.***********9996669999**986478***733..356777**************************65 PP

                       NAM  87 .gk 88 
                                g 
  Niben101Scf06096g01013.1 157 tGG 159
                               143 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-1166158IPR003441NAC domain
PROSITE profilePS5100511.47673182IPR003441NAC domain
PfamPF023652.3E-675160IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MEIVALSVKK QEAIFRFLAY VLPLDNFELA KGTGIDSSIP KVERHWSALD ACSSRDRFTN  60
IIKSKTVVSM VSRLPSVRFY PTDAKLIYFL KQFLKGESLP SECPIRLGEI YGDRPPWEIS  120
DHPEEKIAYF ISPLKKRKES HKRFCRTCAN GTWKAQTGGD PEKVVFIELG VVKDQSKIKS  180
IG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019231683.11e-60PREDICTED: NAC domain-containing protein 78-like
RefseqXP_019244726.11e-60PREDICTED: NAC domain-containing protein 78-like
TrEMBLA0A1J6IJJ93e-59A0A1J6IJJ9_NICAT; Nac domain-containing protein 78
TrEMBLA0A314KH303e-59A0A314KH30_NICAT; Nac domain-containing protein 78
STRINGXP_009787362.19e-58(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8141386
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.18e-08NAC-like, activated by AP3/PI