PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06132g00031.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NF-YB
Protein Properties Length: 126aa    MW: 14377 Da    PI: 4.5999
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06132g00031.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB149.66.1e-47599397
                     NF-YB  3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkk 89
                              e+ +++Pianv+rimk++lP  akisk+aket+qec+sefi fvt+easdkc++e+r+t+ngdd++wal++lGf++y+e++  yl k
  Niben101Scf06132g00031.1  5 EHVKLVPIANVGRIMKQILPPTAKISKEAKETIQECASEFICFVTGEASDKCHKENRRTVNGDDICWALSSLGFDNYAEAMLRYLYK 91
                              566899********************************************************************************* PP

                     NF-YB 90 yrelegek 97
                               re+e+++
  Niben101Scf06132g00031.1 92 LREFERQR 99
                              *****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.6E-455122IPR009072Histone-fold
SuperFamilySSF471136.45E-3610123IPR009072Histone-fold
PfamPF008083.7E-251073IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.0E-153755No hitNo description
PRINTSPR006151.0E-155674No hitNo description
PRINTSPR006151.0E-157593No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MDVDEHVKLV PIANVGRIMK QILPPTAKIS KEAKETIQEC ASEFICFVTG EASDKCHKEN  60
RRTVNGDDIC WALSSLGFDN YAEAMLRYLY KLREFERQRA NQTKGSNDED AYEASSEYEN  120
QETTTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B4e-36394192Transcription factor HapC (Eurofung)
4g92_B4e-36394192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00133DAPTransfer from AT1G09030Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009605488.12e-84PREDICTED: nuclear transcription factor Y subunit B-4-like
RefseqXP_016460750.12e-84PREDICTED: nuclear transcription factor Y subunit B-4-like
SwissprotO040272e-52NFYB4_ARATH; Nuclear transcription factor Y subunit B-4
TrEMBLA0A1S3Z8E45e-83A0A1S3Z8E4_TOBAC; nuclear transcription factor Y subunit B-4-like
STRINGXP_009605488.19e-84(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09030.19e-55nuclear factor Y, subunit B4
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]