PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06153g03015.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 203aa    MW: 22452.5 Da    PI: 4.7888
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06153g03015.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.2e-053355123
                              EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                              y+C+ C + F++   L  H+++H
  Niben101Scf06153g03015.1 33 YTCTFCRREFRSAQALGGHMNVH 55
                              9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.15E-63059No hitNo description
PfamPF139121.4E-53356IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.1573360IPR007087Zinc finger, C2H2
SMARTSM003550.00663355IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803555IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MWNPKDDDDS WEIRAFEEDT SNSMGATWPP RSYTCTFCRR EFRSAQALGG HMNVHRRDRA  60
KLNQTPLASN SSTTFPNANS TLLIQTPEFI TNGGLCLLYS LPNNPNTIFN PSTVKSSVDP  120
STLLTIPHSF MSNLMSSCTP PSLNFPINQP QNINSSSNTS ETSASNGTSN DNNHDDGSTK  180
RDSVIEDEID LELRLGWRSS SSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A9e-142855229superman protein
2l1o_A9e-142855229Transcriptional regulator SUPERMAN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016492913.11e-136PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBLA0A1S4BVP81e-135A0A1S4BVP8_TOBAC; transcriptional regulator SUPERMAN-like
STRINGXP_009774368.11e-132(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59532133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.17e-32C2H2 family protein