PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf06155g01012.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 208aa MW: 22771.9 Da PI: 4.8062

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf06155g01012.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	138.5	2.2e-43	55	154	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++k+l++lpee+reda++s+vyeA+ar+rdPvyG++gvi lq+ Niben101Scf06155g01012.1 55 PCAACKILRRRCVDKCVLAPYFPPTDPLKFTIAHRVFGASNIIKMLQELPEEQREDAVNSMVYEANARIRDPVYGCAGVICLLQK 139 7********************************************************************************** PP DUF260 86 qleqlkaelallkee 100 q+++l+ae a++++e Niben101Scf06155g01012.1 140 QINELQAEFAKAQAE 154 *********9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.521	54	155	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.4E-43	55	152	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MECSNNKTTI SSLSSGSMNS PNIVSATTTS SGLISPKSIL SAPPSQPSSP VILTPCAACK 60 ILRRRCVDKC VLAPYFPPTD PLKFTIAHRV FGASNIIKML QELPEEQRED AVNSMVYEAN 120 ARIRDPVYGC AGVICLLQKQ INELQAEFAK AQAEILNLKC QNSNLLALVC MEVSEYQENS 180 SNSNDYGNNT SLFLEDNSLY AAWEPLWT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-46	45	160	1	116	LOB family transfactor Ramosa2.1
5ly0_B	4e-46	45	160	1	116	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019253003.1	1e-135	PREDICTED: LOB domain-containing protein 1-like
Swissprot	Q9LQR0	2e-72	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	A0A1J6I4S1	1e-133	A0A1J6I4S1_NICAT; Lob domain-containing protein 1
STRING	XP_009611728.1	1e-125	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	2e-74	LOB domain-containing protein 1