PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06156g01002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 209aa    MW: 23723.8 Da    PI: 8.2279
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06156g01002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.91.8e-201562249
                              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                              +i+n++n qvtfskR+ng +KKA+EL++L +aeva++ fs+ +k+y +
  Niben101Scf06156g01002.1 15 KIQNERNLQVTFSKRQNGFFKKASELCTLSGAEVALVGFSPGNKVYSF 62
                              599*******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006621.909666IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-26665IPR002100Transcription factor, MADS-box
CDDcd002654.50E-31780No hitNo description
SuperFamilySSF554552.22E-24777IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-16828IPR002100Transcription factor, MADS-box
PfamPF003194.0E-221562IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-162843IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-164364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MGRKSNGRKK IDMVKIQNER NLQVTFSKRQ NGFFKKASEL CTLSGAEVAL VGFSPGNKVY  60
SFGHPSVDLV IDRFLTENSD ESNVDVPNDD LIEAHRNTNV REVNMDALIE KKGILEMESN  120
RGKALERTRR DATLDERWWK APIDNLNFFQ LREMAEAMEM TKKQCEIEAE HQQKVHGIVF  180
PYRTLGSAIA PYGGARESSS NARPSEFRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1c7u_A1e-15793185MYOCYTE-SPECIFIC ENHANCER FACTOR 2A, C4 FORM
1c7u_B1e-15793185MYOCYTE-SPECIFIC ENHANCER FACTOR 2A, C4 FORM
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009780129.11e-133PREDICTED: agamous-like MADS-box protein AGL62
RefseqXP_016436587.11e-133PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A1S3X9K31e-131A0A1S3X9K3_TOBAC; agamous-like MADS-box protein AGL62
TrEMBLA0A1U7WZS51e-131A0A1U7WZS5_NICSY; agamous-like MADS-box protein AGL62
STRINGXP_009780129.11e-132(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-43AGAMOUS-like 62