PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06186g01007.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 791aa    MW: 86841.1 Da    PI: 6.7406
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06186g01007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS183.81.2e-562795023231
                      GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                               + ++e+A+a+s+g ++ a ++L+rls+ ++ +g+++qRl+ay++ AL++r++     +    p+ e    +s+e++ +++ ++ev
  Niben101Scf06186g01007.1 279 QSITEAATAISEGINHVAVEILTRLSQVSNVRGSSTQRLTAYMVSALRSRVNP----TDYPPPVLEL---HSKEHTVSTQNLYEV 356
                               67899***********************************************9....2222333333...599999999****** PP

                      GRAS  88 sPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfA 169
                               sP++k+++++aN aIleav  +  +++H+iDfd++qG+Q++ Ll+aLa+++ e+p+ l+iT++ ++  g  ++l+++g  L+ +A
  Niben101Scf06186g01007.1 357 SPCFKLGFMAANLAILEAVTDHptNKIHVIDFDVGQGGQYLHLLHALAAKKsEKPAVLKITAFTEQVGGVDDRLNSIGVELKAVA 441
                               *********************9999***********************77737777*********8888**************** PP

                      GRAS 170 eelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklv 231
                               +++gv + fnv +a +++dl+ e+L ++p+EalaVn++++l+r +desv++e+ rde+L+ v
  Niben101Scf06186g01007.1 442 NKIGVCLYFNV-MACKITDLSREKLGLEPDEALAVNFAFKLYRQPDESVTMENLRDELLRRV 502
                               **********9.7999*******************************************987 PP
2GRAS297.82.8e-9149879183373
                      GRAS  83 lfsevsPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetger 164
                               l+  vsP++k+++++aN aIleav  +  +++H+iDfd++qG+Q++ Ll+aLa+++ e+p+ l+iT++ ++  g  ++l+++g  
  Niben101Scf06186g01007.1 498 LLRRVSPCFKLGFMAANLAILEAVTDHptNKIHVIDFDVGQGGQYLHLLHALAAKKsEKPAVLKITAFTEQVGGVDDRLNSIGVE 582
                               6789**********************9999***********************77737777*********8888*********** PP

                      GRAS 165 LakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhn 249
                               L+ +A+++gv + fnv +a +++dl+ e+L ++p+EalaVn++++l+r +desv++e+ rde+L+ vk+lsPkvv+vveqe++ n
  Niben101Scf06186g01007.1 583 LKAVANKIGVCLYFNV-MACKITDLSREKLGLEPDEALAVNFAFKLYRQPDESVTTENLRDELLRRVKGLSPKVVTVVEQELNGN 666
                               ***************9.7999**************************************************************** PP

                      GRAS 250 sesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaa 334
                               +++Fl+r+ ea+ yy alfdsl+a+++r++ er+ +E+  l+r+  n vaceg++r+er+e ++kWr+r+++aGF + p+s+ +a
  Niben101Scf06186g01007.1 667 TAPFLARVNEACGYYGALFDSLDATVSRDNLERVRIEEG-LSRKMANSVACEGRDRVERCEVFGKWRARMSMAGFVQRPMSQLVA 750
                               ***************************************.******************************************999 PP

                      GRAS 335 kqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaW 373
                               ++  + l+     + g++v+e+sg +++gW++r+L+++SaW
  Niben101Scf06186g01007.1 751 NSLCSKLNSGTrgNPGFTVNEQSGGICFGWMGRTLTVASAW 791
                               9887777654437999************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.357251770IPR005202Transcription factor GRAS
PfamPF035149.8E-89498791IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 791 aa     Download sequence    Send to blast
MSSGFPGDFY GAGGINTGRS TMNNNPLRSQ LSGILPDPAT QIVLGKSNLM GKRSLAEFQQ  60
QQQFQFLQQQ QQQNQQQQMI LQQQQQQQGL GFYLRNVKPR NYQQASMDFS AAAAAASSIS  120
SEFSSFSSNS NASTMNTRHT LPVLQQLRSQ PGLPLANTNI SGFLHPGTQN YSTGVHNRAT  180
IGQELLSQES EKKMMNQLQE LEKQLLDDND DDEGDTVSVV TNNEWSETIQ NLISPCQSQN  240
QNQNQNQNQN QKLASLSPSS STSSCASSTE SPPISCPKQS ITEAATAISE GINHVAVEIL  300
TRLSQVSNVR GSSTQRLTAY MVSALRSRVN PTDYPPPVLE LHSKEHTVST QNLYEVSPCF  360
KLGFMAANLA ILEAVTDHPT NKIHVIDFDV GQGGQYLHLL HALAAKKSEK PAVLKITAFT  420
EQVGGVDDRL NSIGVELKAV ANKIGVCLYF NVMACKITDL SREKLGLEPD EALAVNFAFK  480
LYRQPDESVT MENLRDELLR RVSPCFKLGF MAANLAILEA VTDHPTNKIH VIDFDVGQGG  540
QYLHLLHALA AKKSEKPAVL KITAFTEQVG GVDDRLNSIG VELKAVANKI GVCLYFNVMA  600
CKITDLSREK LGLEPDEALA VNFAFKLYRQ PDESVTTENL RDELLRRVKG LSPKVVTVVE  660
QELNGNTAPF LARVNEACGY YGALFDSLDA TVSRDNLERV RIEEGLSRKM ANSVACEGRD  720
RVERCEVFGK WRARMSMAGF VQRPMSQLVA NSLCSKLNSG TRGNPGFTVN EQSGGICFGW  780
MGRTLTVASA W
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A8e-372747919374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016469679.10.0PREDICTED: scarecrow-like protein 8 isoform X2
SwissprotQ9FYR71e-112SCL8_ARATH; Scarecrow-like protein 8
TrEMBLA0A1S3ZZA20.0A0A1S3ZZA2_TOBAC; scarecrow-like protein 8 isoform X2
STRINGXP_009787242.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40232443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-109SCARECROW-like 8