PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06186g07017.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 695aa    MW: 77693.6 Da    PI: 7.9424
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06186g07017.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.4e-057697223
                              EETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                              kC++C++ F  + n++rH+r+H
  Niben101Scf06186g07017.1 76 KCEKCSREFYAPINYRRHMRLH 97
                              7*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.4327597IPR007087Zinc finger, C2H2
PROSITE patternPS0002807797IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 695 aa     Download sequence    Send to blast
MSVAKLRIGA TPAAMKADEG NDSLDTLIRQ AIGKEPLFSF SRTGDGSVQW FQLLHGLEQQ  60
DNVGGWPMLT PLKLQKCEKC SREFYAPINY RRHMRLHRRA LNFDKESRKY RDLLGAFWDK  120
LSVDEIKEVV SLHDVSIKDL AGSSLVNDLA TSLQKMAIWA HPQDCYKAGL ALLEVIQGEP  180
SKLPITSQEL FSILDEASEK TFLCAGTAES VQKYVFDGYA AKKCLELKNL VACASFLFEQ  240
KLVKAWFTDK DAEAMRCQKL LFEEEEAAQK RQAELLERKK LKKLRQKEQR AREQSNWEMG  300
DLEVPADSFE GPIAESSVRS AAASESSSST PEVSDDISSC LELVQFCNNK NMDIEAPQNI  360
SDPHLDLVEI QDVEPPPVSA NSRRHFPHTQ WQVAKSQRTG RNGFRNNQNH EVQKLESVQK  420
HGAIKDRGAP VNGIKIWTRK IRVQNGERLR LDPQKEAIDQ NQSNCEVMIG SISIPMKNCS  480
THEQGNCLTV ERDNFESTEP AMLQKLNHVQ KPARHDILQG GSNGAAVKLW RPVSRHGIGR  540
QDPGEDVISV KLDNRTSSTD NNLRLCSRDN PTGKSKNYTC QVSDGNALQS LGFCSVSAKA  600
FLFQRWKEAI SGDHVRLVLS DDTEVSGQSD TQNGSSEAAL PSADQDHGIL VKADNQQANT  660
GDLSFSSTGN SKVKFRQKPD KSTKIKYIPK QKKKT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1276283ERKKLKKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016501769.10.0PREDICTED: uncharacterized protein LOC107820069
RefseqXP_016501770.10.0PREDICTED: uncharacterized protein LOC107820069
RefseqXP_016501771.10.0PREDICTED: uncharacterized protein LOC107820069
RefseqXP_016501772.10.0PREDICTED: uncharacterized protein LOC107820069
RefseqXP_016501773.10.0PREDICTED: uncharacterized protein LOC107820069
RefseqXP_016501774.10.0PREDICTED: uncharacterized protein LOC107820069
TrEMBLA0A1S4CKL20.0A0A1S4CKL2_TOBAC; uncharacterized protein LOC107820069
STRINGXP_009589941.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37222128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.12e-87C2H2-like zinc finger protein